Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 9.6e-107 390.2 199 100.0
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.2e-101 373.2 199 93.5
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 7.8e-101 370.5 200 96.0
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.2e-98 360.9 200 92.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.2e-98 360.9 200 92.5
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.7e-95 352.8 201 90.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.1e-92 341.3 201 87.6
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.1e-92 341.3 199 87.4
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.6e-92 340.9 201 85.1
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 5.6e-91 337.8 199 86.4
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 5.6e-91 337.8 199 87.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.6e-91 337.8 201 85.1
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.1e-89 333.6 199 84.9
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 5.3e-89 331.3 201 86.1
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 6.9e-89 330.9 201 85.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.0e-88 329.3 199 85.4
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.0e-88 329.3 199 83.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.6e-88 328.9 199 81.9
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 4.5e-88 328.2 199 82.4
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.8e-88 327.8 203 83.7
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.3e-87 326.6 201 84.6
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.2e-87 325.9 199 83.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.2e-87 325.9 182 91.8
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.9e-87 325.5 199 82.9
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.9e-87 325.5 201 83.1
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.1e-86 323.6 200 81.5
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.1e-86 323.6 201 82.6
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.4e-86 323.2 200 83.5
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.2e-86 322.0 200 82.0
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 3.2e-86 322.0 200 83.0
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 4.2e-86 321.6 198 83.3
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 5.5e-86 321.2 199 85.4
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 7.1e-86 320.9 203 80.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.3e-86 320.5 199 82.4
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.2e-85 320.1 199 82.4
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.2e-85 320.1 199 83.4
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.6e-85 319.7 201 81.6
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 2.7e-85 318.9 199 80.4
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 2.7e-85 318.9 199 80.4
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.7e-85 318.9 188 87.8
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.7e-85 318.9 201 80.6
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.7e-85 318.9 201 79.6
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.5e-85 318.5 201 80.6
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.5e-85 318.5 201 82.6
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.5e-85 318.5 201 81.1
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.6e-85 318.2 199 80.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.0e-84 317.0 199 79.9
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.0e-84 317.0 199 80.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.0e-84 317.0 201 80.6
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.8e-84 316.2 201 80.1
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.8e-84 316.2 200 82.5
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.3e-84 315.8 223 75.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.9e-84 315.1 200 82.5
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 5.1e-84 314.7 200 80.0
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 5.1e-84 314.7 199 79.9
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 5.1e-84 314.7 199 80.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.1e-84 314.7 199 79.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 6.7e-84 314.3 199 77.9
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 6.7e-84 314.3 199 79.9
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 6.7e-84 314.3 204 77.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.1e-83 313.5 200 80.5
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.5e-83 313.2 200 81.5
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 3.3e-83 312.0 199 79.9
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 4.3e-83 311.6 199 80.9
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 7.4e-83 310.8 201 78.6
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 9.6e-83 310.5 199 78.9
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.3e-82 310.1 199 80.4
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.3e-82 310.1 199 79.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.6e-82 309.7 201 78.6
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.6e-82 309.7 201 78.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.6e-82 309.7 201 79.6
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.6e-82 309.7 200 79.5
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.7e-82 308.5 199 77.4
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 4.8e-82 308.1 200 79.0
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 4.8e-82 308.1 201 78.1
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.1e-81 307.0 199 77.9
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.1e-81 307.0 201 76.6
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 3.1e-81 305.4 199 76.9
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 4.0e-81 305.1 201 76.6
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 6.9e-81 304.3 198 76.8
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 6.9e-81 304.3 202 76.7
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.2e-80 303.5 199 77.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.0e-80 302.8 201 77.1
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 77.4
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.4e-80 302.0 199 76.9
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 4.5e-80 301.6 199 75.4
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 4.5e-80 301.6 199 75.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 5.8e-80 301.2 197 77.7
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.8e-80 301.2 201 76.6
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.8e-80 301.2 201 76.6
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.0e-79 300.4 199 74.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.0e-79 300.4 199 76.9
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.3e-79 300.1 199 74.9
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.3e-79 300.1 199 79.4
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.3e-79 300.1 222 70.7
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.7e-79 299.7 199 75.4
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.2e-79 299.3 199 75.4
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.8e-79 298.5 211 76.3
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 4.9e-79 298.1 199 75.9
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 8.4e-79 297.4 197 75.6
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.4e-78 296.6 197 75.1
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.9e-78 296.2 181 81.8
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.9e-78 296.2 200 76.0
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.9e-78 296.2 199 75.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.2e-78 295.4 201 75.1
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.2e-78 295.4 199 74.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.2e-78 295.0 199 74.9
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 7.1e-78 294.3 206 73.3
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.3e-78 293.9 209 73.7
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.2e-77 293.5 199 76.4
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.6e-77 293.1 199 75.9
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.1e-77 292.7 213 72.3
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.7e-77 292.4 215 71.2
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 6.0e-77 291.2 179 82.7
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 6.0e-77 291.2 202 74.8
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 7.9e-77 290.8 202 74.8
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 7.9e-77 290.8 199 75.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 2.3e-76 289.3 199 74.9
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 3.0e-76 288.9 199 73.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 3.0e-76 288.9 199 75.4
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.5e-75 286.6 215 70.2
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.5e-75 285.8 181 80.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.6e-74 283.1 183 79.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.6e-74 283.1 198 70.7
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 6.3e-74 281.2 200 73.5
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 8.2e-74 280.8 201 74.1
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.4e-73 279.3 248 61.3
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 5.3e-73 278.1 197 69.5
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.4e-70 270.0 188 75.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.3e-70 267.3 181 75.7
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.6e-69 265.0 199 69.8
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.3e-68 263.5 194 69.1
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.1e-67 260.4 182 74.7
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.9e-67 259.6 204 68.1
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 7.4e-67 257.7 218 64.2
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.3e-66 256.9 192 65.6
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.8e-66 255.8 190 66.3
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.1e-65 253.8 233 60.5
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 3.4e-64 248.8 198 63.6
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 5.9e-64 248.1 153 85.0
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.0e-63 247.3 183 67.8
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 2.1e-61 239.6 179 69.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 3.3e-59 232.3 199 61.3
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.5e-56 223.4 201 62.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.1e-49 200.7 119 86.6
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.3e-47 193.7 116 82.8
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.6e-45 186.8 184 58.2
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.6e-43 179.5 190 57.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 9.1e-41 171.0 93 93.5
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 7.7e-40 167.9 104 83.7
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.7e-37 159.5 99 80.8
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.5e-35 151.4 102 72.5
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.1e-30 137.5 79 84.8
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 9.5e-30 134.4 202 45.5
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 6.1e-29 131.7 70 94.3
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.4e-28 130.6 97 70.1
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 8.8e-28 127.9 99 68.7
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.2e-26 123.2 70 75.7
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 4.3e-22 109.0 99 62.6
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 9.5e-22 107.8 195 39.5
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 4.7e-21 105.5 200 37.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 5.2e-20 102.1 98 61.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.0e-19 100.1 63 77.8
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-18 97.1 76 69.7
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.9e-18 96.3 98 59.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 2.7e-16 89.7 71 60.6
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.7e-15 87.0 62 69.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 3.3e-14 82.8 57 73.7
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.1e-13 80.1 180 33.3
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.2e-13 78.6 50 78.0
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.0e-13 78.2 52 76.9
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 7.8e-08 61.6 72 51.4
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.5e-06 56.6 57 59.6


User provided reference genes

Program Settings