Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 8.6e-182 640.2 322 100.0
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 4.2e-144 515.0 322 81.1
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 7.1e-144 514.2 322 79.8
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 6.7e-134 481.1 322 76.4
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.9e-117 426.4 322 70.2
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 2.5e-112 409.5 322 62.7
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 4.2e-112 408.7 322 62.1
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 1.2e-111 407.1 322 63.7
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 6.1e-111 404.8 323 63.8
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 7.9e-111 404.4 322 62.1
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 5.1e-110 401.7 322 63.7
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 1.5e-109 400.2 322 62.7
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 6.3e-108 394.8 322 59.6
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 1.8e-107 393.3 322 59.3
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 1.8e-107 393.3 322 59.9
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 5.3e-107 391.7 369 56.4
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.0e-105 387.5 322 58.1
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 5.0e-105 385.2 322 59.9
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.1e-104 384.0 322 59.6
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 2.5e-104 382.9 322 58.7
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 4.2e-104 382.1 322 59.0
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 9.4e-104 380.9 322 59.3
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 6.1e-103 378.3 322 58.7
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 6.1e-103 378.3 322 58.7
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.0e-102 377.5 262 74.4
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 1.4e-102 377.1 322 59.9
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 2.2e-100 369.8 322 59.3
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 2.2e-100 369.8 323 59.1
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 2.8e-100 369.4 322 59.0
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 8.2e-100 367.9 322 59.3
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 1.8e-99 366.7 322 56.2
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 1.8e-99 366.7 322 57.8
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 5.3e-99 365.2 323 57.9
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 9.1e-99 364.4 324 57.1
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 1.2e-98 364.0 322 56.8
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 1.2e-98 364.0 322 58.7
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 2.6e-98 362.8 324 58.3
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 2.6e-98 362.8 324 60.2
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 2.6e-98 362.8 322 56.2
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 5.9e-98 361.7 322 56.5
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 1.0e-97 360.9 322 57.8
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 2.2e-97 359.8 322 55.6
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 5.0e-97 358.6 323 55.1
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 1.1e-96 357.5 324 58.0
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 2.5e-96 356.3 322 56.5
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 5.5e-96 355.1 323 58.5
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 4.7e-95 352.1 322 56.2
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 6.1e-95 351.7 322 55.3
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 1.1e-93 347.4 322 57.1
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 2.2e-92 343.2 324 54.0
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 2.8e-92 342.8 322 53.7
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.4e-91 340.5 323 56.7
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.4e-91 340.5 397 48.6
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 4.1e-91 339.0 324 55.6
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 7.0e-91 338.2 323 56.0
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 1.2e-90 337.4 323 53.3
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 2.0e-90 336.7 322 53.4
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 7.7e-90 334.7 322 53.1
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 5.0e-89 332.0 328 53.7
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 8.5e-89 331.3 325 55.7
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 1.1e-88 330.9 322 54.0
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 1.9e-88 330.1 322 52.8
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 2.5e-88 329.7 323 53.6
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 7.2e-88 328.2 325 55.1
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 2.1e-87 326.6 322 51.6
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 6.1e-87 325.1 441 43.5
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 1.4e-86 323.9 322 52.8
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 1.4e-86 323.9 326 50.6
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 2.3e-86 323.2 323 52.6
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 6.8e-86 321.6 323 54.5
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 1.5e-85 320.5 323 54.2
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 5.7e-85 318.5 323 50.8
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 5.7e-85 318.5 325 53.8
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 7.5e-85 318.2 322 50.6
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 2.2e-84 316.6 325 53.5
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 2.2e-84 316.6 322 52.2
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 2.8e-84 316.2 323 52.6
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 3.7e-84 315.8 333 51.4
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 1.4e-83 313.9 323 50.8
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 1.8e-83 313.5 322 52.2
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 1.6e-82 310.5 327 52.9
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 1.0e-81 307.8 322 51.6
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 2.2e-81 306.6 322 51.6
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 5.5e-80 302.0 263 63.5
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 2.7e-79 299.7 322 51.2
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 4.0e-78 295.8 347 48.7
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 8.8e-78 294.7 332 48.2
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 2.0e-77 293.5 243 57.6
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 2.0e-77 293.5 325 48.6
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 3.1e-75 286.2 262 56.5
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 2.3e-73 280.0 332 47.9
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 2.3e-73 280.0 322 49.1
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 2.3e-73 280.0 324 47.5
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 8.0e-71 271.6 277 53.4
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 6.8e-70 268.5 327 46.2
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 5.7e-69 265.4 294 51.4
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 2.2e-68 263.5 324 46.3
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 3.7e-68 262.7 276 49.6
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 4.9e-68 262.3 282 51.8
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 2.4e-67 260.0 276 48.6
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 4.1e-67 259.2 322 47.2
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 5.4e-67 258.8 246 54.9
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 5.4e-67 258.8 294 48.6
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 7.0e-67 258.5 332 44.6
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 7.8e-66 255.0 228 57.5
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 3.0e-65 253.1 302 46.4
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.2e-61 241.1 395 39.0
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 1.2e-61 241.1 340 41.5
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 6.4e-60 235.3 262 50.0
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 1.0e-57 228.0 336 39.9
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 1.3e-57 227.6 333 39.9
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 3.3e-56 223.0 278 45.0
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 3.6e-55 219.5 313 42.8
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.1e-54 218.0 331 39.0
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 1.4e-54 217.6 327 37.3
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 6.4e-52 208.8 332 38.0
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 2.4e-51 206.8 323 38.7
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 3.2e-51 206.5 169 57.4
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.3e-44 184.5 230 43.0
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 1.7e-44 184.1 323 36.8
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 4.9e-44 182.6 199 48.2
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 6.2e-31 139.0 250 36.4
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 2.3e-17 94.0 55 80.0
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 5.6e-16 89.4 66 65.2
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.3e-15 88.2 47 80.9
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 3.4e-13 80.1 49 73.5
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 2.7e-10 70.5 49 67.3


User provided reference genes

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