Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.1e-233 812.0 405 100.0
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.6e-177 626.3 379 83.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.6e-175 619.0 381 80.6
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.6e-169 598.6 387 79.6
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.4e-165 585.9 378 79.4
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.4e-165 585.9 379 79.2
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 3.8e-118 429.1 378 57.1
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.8e-112 410.2 398 54.5
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 6.9e-112 408.3 387 55.0
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.6e-111 406.4 375 57.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 2.9e-110 402.9 370 57.8
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.9e-110 402.9 374 57.8
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 3.0e-107 392.9 375 54.1
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 8.7e-107 391.3 373 52.3
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.2e-105 386.7 377 53.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-104 384.4 383 53.3
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 4.1e-104 382.5 374 53.2
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 6.5e-102 375.2 376 53.5
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 7.2e-101 371.7 383 53.3
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 9.4e-101 371.3 383 50.7
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.2e-100 370.9 387 51.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.6e-100 370.5 369 53.7
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 4.6e-100 369.0 384 52.1
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.0e-99 367.9 370 51.4
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.8e-99 367.1 373 52.0
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.3e-99 366.7 395 52.7
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.9e-99 365.9 373 51.7
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 5.1e-99 365.5 406 48.5
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 5.7e-98 362.1 382 51.8
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.7e-97 360.5 421 48.2
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 6.3e-97 358.6 369 52.8
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 4.1e-96 355.9 430 49.5
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.9e-96 355.1 382 51.0
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.9e-95 352.1 389 50.9
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 5.9e-95 352.1 371 52.0
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.3e-94 350.9 391 48.8
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-94 350.9 384 51.6
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.4e-93 347.4 368 50.3
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.7e-92 342.4 388 49.5
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 9.1e-88 328.2 369 50.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-86 324.3 451 42.1
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 3.8e-86 322.8 378 46.3
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 8.5e-86 321.6 381 46.2
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-85 321.2 395 45.8
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.2e-85 319.7 404 44.8
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.2e-85 319.7 404 44.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 2.7e-84 316.6 376 47.6
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.1e-84 315.5 387 45.2
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 2.0e-82 310.5 365 46.3
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 4.4e-82 309.3 388 48.2
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 9.7e-82 308.1 369 45.0
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 8.2e-81 305.1 403 46.2
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 8.2e-81 305.1 379 45.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 7.0e-80 302.0 384 46.9
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.6e-79 300.1 384 44.5
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 5.9e-79 298.9 384 43.8
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.0e-78 298.1 393 43.0
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 4.2e-77 292.7 376 43.9
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 7.2e-77 292.0 400 45.0
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 7.2e-77 292.0 394 41.9
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 4.0e-75 286.2 380 43.2
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.6e-74 283.5 388 41.8
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 3.3e-74 283.1 397 40.6
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 7.5e-74 282.0 376 42.8
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 2.8e-73 280.0 397 41.8
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 3.7e-73 279.6 404 40.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 4.8e-73 279.3 383 43.1
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 5.3e-72 275.8 374 42.8
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 7.0e-72 275.4 400 40.2
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 9.1e-72 275.0 377 43.0
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 4.5e-71 272.7 375 40.3
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 5.9e-71 272.3 342 48.2
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 7.7e-71 271.9 333 46.2
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.2e-70 270.4 395 40.0
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.0e-70 269.2 398 41.0
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.0e-70 269.2 398 41.0
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 8.5e-70 268.5 373 42.6
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 8.5e-70 268.5 381 42.3
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.1e-69 268.1 406 39.7
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.9e-69 267.3 377 42.4
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 4.0e-67 259.6 397 38.8
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 5.2e-67 259.2 395 39.5
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 6.8e-67 258.8 391 39.4
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.4e-66 256.1 380 40.5
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 9.8e-66 255.0 397 39.8
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.8e-66 255.0 332 44.0
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.8e-65 253.4 387 38.2
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.7e-65 253.1 381 39.1
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 6.3e-65 252.3 384 42.2
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 4.1e-64 249.6 385 41.3
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 4.1e-64 249.6 273 51.3
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.4e-64 249.2 387 38.5
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 5.4e-64 249.2 401 37.7
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.2e-63 248.1 389 36.8
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.6e-63 247.7 383 42.0
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 2.0e-63 247.3 384 41.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.0e-63 247.3 379 39.6
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.7e-63 246.9 356 38.8
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.7e-63 246.9 395 39.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.3e-62 244.6 390 39.5
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.9e-62 243.4 394 38.1
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 3.8e-62 243.0 378 41.0
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.5e-61 240.4 397 36.5
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 3.3e-61 240.0 389 38.0
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.3e-61 240.0 389 38.0
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.3e-61 240.0 358 38.5
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.5e-61 239.2 413 35.8
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.4e-59 234.6 356 39.3
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 2.6e-58 230.3 372 36.6
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.6e-58 230.3 376 35.9
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.4e-58 229.9 358 37.2
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 9.8e-58 228.4 382 36.6
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.9e-57 226.1 369 37.4
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 8.3e-57 225.3 388 39.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 8.3e-57 225.3 391 37.1
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.4e-56 224.6 333 40.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.1e-56 223.4 375 36.3
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 7.0e-56 222.2 391 35.0
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 9.2e-56 221.9 393 37.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.7e-55 220.3 388 37.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.5e-55 219.9 391 35.3
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 5.9e-55 219.2 379 37.2
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.3e-54 217.2 374 36.4
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 3.8e-54 216.5 385 38.7
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 3.8e-54 216.5 397 33.5
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.5e-53 213.8 333 40.5
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 3.3e-53 213.4 393 35.6
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.3e-53 212.2 390 36.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 9.5e-53 211.8 404 34.2
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.0e-51 206.5 382 36.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 6.8e-51 205.7 387 35.1
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.6e-50 203.8 394 34.8
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.8e-50 202.6 409 34.5
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 9.8e-50 201.8 388 35.6
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.7e-49 201.1 378 35.7
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.9e-49 200.3 381 34.6
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.2e-47 194.9 363 33.1
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.2e-47 194.9 274 43.8
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.9e-45 187.6 246 41.5
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 4.3e-45 186.4 360 35.3
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.6e-42 177.2 399 32.1
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.6e-42 177.2 343 32.9
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 9.8e-42 175.3 262 40.8
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-41 174.9 315 35.9
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 6.4e-41 172.6 249 39.8
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.4e-40 170.6 280 37.1
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 9.2e-40 168.7 280 36.8
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 6.6e-38 162.5 270 38.5
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 8.6e-38 162.2 259 36.3
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.4e-34 150.2 122 62.3
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.2e-32 143.7 241 37.8
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 9.9e-26 122.1 271 31.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-25 121.7 243 36.6
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 8.4e-25 119.0 157 40.1
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 4.3e-21 106.7 287 32.1
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.4e-19 100.9 116 48.3
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-18 98.6 126 44.4
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.4e-18 97.1 319 27.6
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 7.6e-18 95.9 152 34.2
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.4e-16 90.9 124 40.3
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.6e-15 88.2 133 39.8
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.7e-15 87.4 106 42.5
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.5e-13 80.9 209 30.6
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.3e-13 80.5 91 46.2
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 5.6e-13 79.7 161 37.3
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 3.6e-12 77.0 102 39.2
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 1.4e-11 75.1 160 35.0
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 4.0e-11 73.6 116 36.2
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.9e-11 72.8 100 40.0
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.5e-10 71.6 131 38.9
MELO3C006802.2 Cucumis melo HOM05D000885 ORTHO05D001238 4.2e-08 63.5 63 50.8
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 4.2e-08 63.5 102 36.3


User provided reference genes

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