Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 5.6e-150 534.3 270 100.0
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.4e-139 498.0 270 92.6
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 2.2e-138 495.7 270 91.9
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 2.9e-138 495.4 270 91.9
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 3.7e-138 495.0 270 91.9
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 8.6e-135 483.8 270 90.0
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 9.0e-116 420.6 258 82.9
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 1.3e-114 416.8 256 82.0
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 3.8e-106 388.7 263 76.8
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 6.0e-104 381.3 257 77.4
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 1.9e-102 376.3 273 72.2
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 5.6e-102 374.8 260 74.2
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 7.4e-102 374.4 260 74.2
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 4.8e-101 371.7 260 74.6
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 8.1e-101 370.9 257 74.3
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 1.1e-100 370.5 261 74.3
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 1.2e-99 367.1 261 73.2
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 1.7e-98 363.2 256 72.3
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 6.5e-98 361.3 263 71.1
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 8.4e-98 360.9 257 73.5
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 8.4e-98 360.9 247 74.5
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 5.5e-97 358.2 261 71.3
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 5.5e-97 358.2 262 69.8
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 7.1e-97 357.8 258 70.9
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.2e-96 357.1 248 75.4
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.6e-96 356.7 261 70.9
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 7.9e-96 354.4 264 70.5
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 7.9e-96 354.4 238 75.6
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 2.3e-95 352.8 261 71.3
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 3.9e-95 352.1 261 70.1
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 5.1e-95 351.7 262 69.8
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 1.5e-94 350.1 274 67.5
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 1.9e-94 349.7 244 73.8
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.9e-94 349.7 280 65.0
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 1.9e-94 349.7 236 73.3
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 1.9e-94 349.7 291 65.3
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 3.3e-94 349.0 260 69.6
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 4.3e-94 348.6 262 69.5
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 5.7e-94 348.2 256 68.8
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 5.7e-94 348.2 257 69.6
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 9.6e-94 347.4 270 67.4
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 1.3e-93 347.1 260 67.7
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 1.6e-93 346.7 246 71.1
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 1.4e-92 343.6 252 68.7
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 2.4e-92 342.8 261 68.6
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 3.1e-92 342.4 263 69.2
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 4.1e-92 342.0 233 72.5
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 4.1e-92 342.0 233 72.5
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 4.1e-92 342.0 246 70.7
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 9.0e-92 340.9 244 68.9
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 1.2e-91 340.5 244 69.7
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 2.6e-91 339.3 253 70.4
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 3.4e-91 339.0 270 67.4
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 4.5e-91 338.6 233 72.1
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 4.5e-91 338.6 259 66.4
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 5.8e-91 338.2 233 72.1
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 1.0e-90 337.4 264 67.0
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 1.7e-90 336.7 244 69.3
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 1.7e-90 336.7 244 71.3
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 2.9e-90 335.9 252 69.8
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 1.1e-89 334.0 245 68.6
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 1.4e-89 333.6 245 68.2
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 1.4e-89 333.6 274 65.0
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 1.4e-89 333.6 244 69.7
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 3.2e-89 332.4 262 69.5
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 4.2e-89 332.0 260 68.1
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 5.5e-89 331.6 243 69.5
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 5.5e-89 331.6 250 68.4
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 7.1e-89 331.3 239 69.9
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 2.1e-88 329.7 232 70.3
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 2.1e-88 329.7 263 66.2
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 2.7e-88 329.3 252 67.5
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 7.9e-88 327.8 251 65.7
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 1.0e-87 327.4 232 69.4
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 1.3e-87 327.0 243 68.7
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 5.1e-87 325.1 259 64.1
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 8.7e-87 324.3 236 71.6
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 2.5e-86 322.8 259 66.4
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.3e-85 320.5 263 64.3
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 1.6e-85 320.1 242 67.4
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 4.8e-85 318.5 245 66.1
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 1.1e-84 317.4 254 65.4
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 1.1e-84 317.4 228 68.0
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 2.4e-84 316.2 242 66.9
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 6.9e-84 314.7 263 63.9
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 2.0e-83 313.2 264 63.3
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.6e-83 312.8 262 62.2
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 1.4e-81 307.0 227 68.3
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 1.9e-81 306.6 249 64.7
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 1.9e-81 306.6 251 62.9
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 4.2e-81 305.4 233 66.5
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 3.6e-80 302.4 245 61.6
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 6.1e-80 301.6 255 62.0
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 9.7e-78 294.3 235 64.7
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 3.7e-77 292.4 262 59.9
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 1.1e-76 290.8 235 65.1
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 2.4e-76 289.7 246 63.0
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 1.2e-75 287.3 235 63.8
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 2.9e-74 282.7 274 58.4
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 2.1e-72 276.6 271 52.0
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 5.7e-70 268.5 222 63.1
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 1.4e-68 263.8 171 78.9
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 1.8e-68 263.5 268 52.2
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 1.5e-67 260.4 276 50.7
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 2.3e-63 246.5 208 60.1
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 8.8e-63 244.6 254 54.7
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.1e-60 237.7 171 67.8
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 2.0e-59 233.4 195 63.1
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.1e-57 227.6 148 73.0
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 1.9e-57 226.9 166 69.3
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 2.5e-57 226.5 170 68.2
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 5.5e-57 225.3 154 72.1
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 1.8e-55 220.3 222 51.4
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 3.8e-50 202.6 255 45.9
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 5.5e-49 198.7 151 72.2
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 7.0e-44 181.8 214 46.3
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 1.1e-41 174.5 192 50.0
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 9.5e-41 171.4 141 66.0
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 1.2e-40 171.0 117 70.1
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 2.1e-40 170.2 163 61.3
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 8.0e-40 168.3 146 63.7
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 4.6e-35 152.5 157 56.1
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 1.5e-33 147.5 107 67.3
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 2.6e-30 136.7 163 47.9
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 2.0e-27 127.1 87 73.6
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 2.0e-27 127.1 87 73.6
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 4.6e-27 125.9 83 75.9
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 6.0e-27 125.6 84 73.8
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 3.9e-26 122.9 84 72.6
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 3.9e-26 122.9 84 72.6
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 2.5e-25 120.2 92 70.7
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 3.6e-24 116.3 100 59.0
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.2e-22 111.3 140 47.9
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.3e-21 107.8 92 62.0
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 1.6e-19 100.9 92 57.6
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 6.6e-18 95.5 75 61.3
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.3e-17 93.2 257 32.7
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 5.2e-15 85.9 239 30.1


User provided reference genes

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