Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 2.7e-71 271.9 141 100.0
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 3.6e-60 235.0 141 85.1
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 3.8e-57 224.9 143 83.2
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 1.9e-56 222.6 143 81.8
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 2.1e-55 219.2 143 80.4
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 6.9e-43 177.6 157 63.7
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 7.6e-42 174.1 141 66.7
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 7.6e-42 174.1 148 64.2
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 1.3e-41 173.3 151 65.6
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 1.7e-41 172.9 142 66.2
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 4.9e-41 171.4 146 65.1
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.4e-40 169.9 147 62.6
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 4.2e-40 168.3 108 77.8
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 7.1e-40 167.5 137 67.2
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 7.1e-40 167.5 143 64.3
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 1.2e-39 166.8 142 63.4
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 1.2e-39 166.8 106 78.3
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 2.1e-39 166.0 143 64.3
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 2.7e-39 165.6 123 71.5
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 4.6e-39 164.9 147 61.2
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 4.6e-39 164.9 147 61.2
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 4.6e-39 164.9 145 63.4
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 4.6e-39 164.9 106 77.4
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 6.0e-39 164.5 98 81.6
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 1.0e-38 163.7 151 62.3
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 1.0e-38 163.7 148 62.8
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 1.3e-38 163.3 148 60.1
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 1.3e-38 163.3 113 71.7
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 2.3e-38 162.5 120 68.3
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 2.3e-38 162.5 100 78.0
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 5.1e-38 161.4 153 60.8
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 6.7e-38 161.0 149 63.1
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 6.7e-38 161.0 148 61.5
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 6.7e-38 161.0 140 63.6
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 6.7e-38 161.0 109 73.4
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 1.1e-37 160.2 105 72.4
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 1.1e-37 160.2 127 62.2
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 1.9e-37 159.5 149 62.4
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 1.9e-37 159.5 113 71.7
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 2.5e-37 159.1 106 73.6
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 2.5e-37 159.1 99 75.8
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 3.3e-37 158.7 142 61.3
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 4.3e-37 158.3 149 59.1
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 1.3e-36 156.8 147 62.6
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 2.1e-36 156.0 125 62.4
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 2.1e-36 156.0 140 60.0
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 3.7e-36 155.2 127 66.1
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 4.8e-36 154.8 100 77.0
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 4.8e-36 154.8 110 71.8
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 6.3e-36 154.5 149 57.7
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 8.2e-36 154.1 149 59.7
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 1.8e-35 152.9 121 63.6
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 1.8e-35 152.9 98 74.5
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 1.8e-35 152.9 126 62.7
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 2.4e-35 152.5 148 59.5
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 3.1e-35 152.1 129 63.6
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 4.1e-35 151.8 106 69.8
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 4.1e-35 151.8 149 58.4
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 6.9e-35 151.0 127 63.8
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 1.5e-34 149.8 128 65.6
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 1.5e-34 149.8 128 65.6
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 1.5e-34 149.8 141 59.6
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 2.6e-34 149.1 130 63.8
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 2.6e-34 149.1 147 57.8
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 3.4e-34 148.7 130 59.2
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 3.4e-34 148.7 99 73.7
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 3.4e-34 148.7 121 63.6
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 3.4e-34 148.7 111 62.2
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 4.5e-34 148.3 124 63.7
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 5.9e-34 147.9 127 63.0
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 1.0e-33 147.1 103 70.9
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 2.2e-33 146.0 108 68.5
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 2.9e-33 145.6 127 64.6
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 3.8e-33 145.2 149 59.1
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 5.0e-33 144.8 125 62.4
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 5.0e-33 144.8 97 71.1
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 5.0e-33 144.8 97 70.1
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 6.5e-33 144.4 103 68.9
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 8.5e-33 144.1 108 66.7
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 8.5e-33 144.1 123 62.6
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 1.1e-32 143.7 107 67.3
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 1.1e-32 143.7 107 67.3
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 1.1e-32 143.7 103 68.9
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 1.4e-32 143.3 149 58.4
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 1.4e-32 143.3 102 70.6
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 1.9e-32 142.9 141 57.4
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 5.5e-32 141.4 126 61.1
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 7.2e-32 141.0 126 61.1
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 9.3e-32 140.6 145 55.9
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 1.2e-31 140.2 132 57.6
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 1.6e-31 139.8 142 54.2
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 2.1e-31 139.4 125 60.0
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 2.7e-31 139.0 121 62.0
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 2.7e-31 139.0 97 70.1
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 6.1e-31 137.9 179 48.0
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 7.9e-31 137.5 99 65.7
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 1.0e-30 137.1 141 54.6
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 1.3e-30 136.7 111 57.7
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 2.3e-30 136.0 143 50.3
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 6.7e-30 134.4 93 65.6
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 4.3e-29 131.7 173 44.5
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 9.7e-29 130.6 151 51.0
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 9.7e-29 130.6 94 74.5
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 1.0e-25 120.6 78 74.4
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 1.1e-24 117.1 128 50.0
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 7.2e-24 114.4 99 61.6
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 1.6e-23 113.2 83 68.7
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 1.0e-22 110.5 151 49.7
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 5.1e-22 108.2 211 36.5
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 1.1e-19 100.5 55 87.3
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 1.4e-19 100.1 61 73.8
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 2.4e-19 99.4 101 50.5
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 4.1e-19 98.6 140 39.3
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 1.2e-18 97.1 56 83.9
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 1.7e-17 93.2 106 56.6
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 5.5e-16 88.2 98 41.8
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 1.2e-15 87.0 96 45.8
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 1.8e-14 83.2 87 43.7
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 1.2e-10 70.5 95 40.0
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 2.6e-10 69.3 42 71.4
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 4.7e-07 58.5 96 33.3


User provided reference genes

Program Settings