Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.4e-142 509.6 258 100.0
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.9e-132 475.3 258 91.9
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 7.2e-131 470.7 259 92.3
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 1.7e-119 433.0 237 91.1
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 3.7e-119 431.8 258 82.6
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 1.5e-104 383.3 212 91.0
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 9.8e-104 380.6 258 74.4
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 3.7e-103 378.6 259 75.3
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 8.6e-100 367.5 259 71.4
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 1.5e-99 366.7 259 71.0
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 2.5e-99 365.9 257 72.0
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 1.2e-98 363.6 241 75.5
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 1.3e-95 353.6 259 68.3
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 1.3e-95 353.6 259 68.3
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 1.3e-95 353.6 259 71.8
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 8.3e-95 350.9 259 68.7
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 3.2e-94 349.0 256 71.5
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 3.5e-93 345.5 250 72.0
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 1.0e-92 344.0 259 69.9
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 1.0e-92 344.0 252 69.4
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 1.7e-92 343.2 249 69.5
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.3e-92 342.8 258 70.5
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 2.3e-92 342.8 258 67.4
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 5.1e-92 341.7 249 70.7
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 8.6e-92 340.9 260 70.4
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 9.5e-91 337.4 250 69.6
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 1.2e-90 337.0 258 68.2
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 2.8e-90 335.9 257 66.5
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 6.2e-90 334.7 258 67.8
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 6.2e-90 334.7 292 62.3
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 1.4e-89 333.6 259 66.0
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 5.2e-89 331.6 229 73.8
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 6.8e-89 331.3 248 67.7
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 6.8e-89 331.3 254 68.9
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 4.4e-88 328.6 257 68.5
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 1.3e-87 327.0 248 68.5
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.7e-87 326.6 257 68.1
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.2e-87 326.2 259 65.6
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.9e-87 325.1 258 65.5
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 8.4e-87 324.3 248 68.1
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 2.4e-86 322.8 248 69.0
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 3.2e-86 322.4 250 66.4
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 4.1e-86 322.0 250 67.6
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 5.4e-86 321.6 258 65.5
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.2e-85 320.5 259 65.3
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 1.2e-85 320.5 258 61.2
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 7.8e-85 317.8 239 71.5
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 3.0e-84 315.8 220 73.2
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 3.0e-84 315.8 258 61.6
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 6.6e-84 314.7 258 61.6
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 1.1e-83 313.9 237 67.5
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 1.6e-82 310.1 258 60.5
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 3.6e-82 308.9 254 62.2
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 4.7e-82 308.5 260 59.6
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 6.2e-82 308.1 258 60.5
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 8.1e-82 307.8 256 59.4
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 8.1e-82 307.8 262 59.2
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 8.1e-82 307.8 262 59.2
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 1.1e-81 307.4 247 66.0
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 1.4e-81 307.0 261 59.4
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 1.8e-81 306.6 262 59.2
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 2.4e-81 306.2 258 60.1
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 4.0e-81 305.4 259 59.5
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 2.0e-80 303.1 258 59.7
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 2.0e-80 303.1 258 59.7
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 2.0e-80 303.1 238 66.8
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 5.8e-80 301.6 260 63.1
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 5.8e-80 301.6 260 63.1
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 5.8e-80 301.6 253 64.0
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 7.6e-80 301.2 240 63.8
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 7.6e-80 301.2 253 63.6
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 9.9e-80 300.8 255 59.2
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 2.2e-79 299.7 258 61.2
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 2.4e-78 296.2 262 60.7
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 5.4e-78 295.0 256 58.6
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 5.4e-78 295.0 229 67.2
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 5.4e-78 295.0 248 61.7
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 7.1e-78 294.7 253 60.9
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 9.3e-78 294.3 253 61.3
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 1.6e-77 293.5 284 54.2
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 6.0e-77 291.6 258 58.5
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 1.3e-74 283.9 247 61.5
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 2.8e-74 282.7 237 60.8
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.1e-73 280.8 255 57.6
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 9.9e-72 274.2 240 59.2
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 6.4e-71 271.6 237 60.8
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 7.1e-70 268.1 258 55.4
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 1.6e-69 266.9 238 57.6
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 7.9e-69 264.6 188 67.0
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 1.1e-67 260.8 224 63.8
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 1.1e-67 260.8 254 54.3
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 2.5e-67 259.6 253 55.3
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 4.8e-66 255.4 254 54.7
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 1.4e-65 253.8 253 53.0
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 9.9e-64 247.7 250 56.0
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 4.9e-63 245.4 173 70.5
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 7.9e-61 238.0 213 58.7
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.1e-57 227.6 332 43.7
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.4e-54 217.2 170 64.7
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 8.7e-52 208.0 245 50.2
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 2.5e-51 206.5 148 65.5
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 5.1e-44 182.2 135 70.4
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.6e-37 159.5 116 69.0
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.6e-37 159.5 116 69.0
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 8.8e-36 154.8 136 59.6
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 1.5e-35 154.1 110 71.8
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 6.3e-34 148.7 247 40.1
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 2.2e-26 123.6 212 38.7
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 3.5e-24 116.3 128 52.3
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 1.7e-23 114.0 95 56.8
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 5.0e-23 112.5 88 65.9
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 4.4e-19 99.4 154 37.0
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 7.5e-19 98.6 184 31.5
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 1.3e-18 97.8 62 77.4
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 2.7e-16 90.1 104 45.2
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 1.2e-11 74.7 233 25.3
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 1.4e-09 67.8 136 32.4


User provided reference genes

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