Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G044200 Theobroma cacao HOM05D000433 ORTHO05D015038 1.9e-50 202.2 100 100.0
COL.COLO4_18651 Corchorus olitorius HOM05D000433 ORTHO05D003991 1.3e-22 109.8 91 70.3
Thecc.09G043800 Theobroma cacao HOM05D000433 ORTHO05D003991 2.9e-19 98.6 89 62.9
Duzib168G1402 Durio zibethinus HOM05D000433 ORTHO05D003991 3.8e-19 98.2 90 62.2
Gohir.A05G047200 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.1e-18 96.7 87 63.2
Gohir.D05G048950 Gossypium hirsutum HOM05D000433 ORTHO05D015038 1.4e-18 96.3 91 60.4
Atru.chr7.2110 Acer truncatum HOM05D000433 ORTHO05D003991 1.9e-18 95.9 87 59.8
Gorai.009G050300 Gossypium raimondii HOM05D000433 ORTHO05D003991 9.3e-18 93.6 87 62.1
Potri.006G239402 Populus trichocarpa HOM05D000433 ORTHO05D003991 2.7e-17 92.0 88 55.7
Dinv14257 Davidia involucrata HOM05D000433 ORTHO05D003991 1.8e-16 89.4 82 57.3
Hma1.2p1_0774F.1_g216310 Hydrangea macrophylla HOM05D000433 ORTHO05D015038 3.9e-16 88.2 87 54.0
Dinv14259 Davidia involucrata HOM05D000433 ORTHO05D003991 3.3e-15 85.1 82 54.9
Ciclev10010551m.g Citrus clementina HOM05D000433 ORTHO05D003991 4.3e-15 84.7 82 56.1
Atru.chr7.2096 Acer truncatum HOM05D000433 ORTHO05D003991 7.4e-15 84.0 87 55.2
CSS0012936 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 1.3e-14 83.2 87 50.6
Dinv27895 Davidia involucrata HOM05D000433 ORTHO05D003991 1.3e-14 83.2 87 51.7
Potri.018G043500 Populus trichocarpa HOM05D000433 ORTHO05D003991 2.8e-14 82.0 86 51.2
Gohir.D05G049100 Gossypium hirsutum HOM05D000433 ORTHO05D003991 3.7e-14 81.6 75 65.3
Gohir.D06G093300 Gossypium hirsutum HOM05D000433 ORTHO05D003991 6.2e-14 80.9 85 51.8
Potri.006G239200 Populus trichocarpa HOM05D000433 ORTHO05D003991 6.2e-14 80.9 87 49.4
Actinidia30273 Actinidia chinensis HOM05D000433 ORTHO05D003991 1.1e-13 80.1 82 50.0
Gohir.1Z049422 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.1e-13 80.1 85 51.8
Gohir.A06G093600 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.1e-13 80.1 85 51.8
Gorai.010G107700 Gossypium raimondii HOM05D000433 ORTHO05D003991 1.4e-13 79.7 85 51.8
TWI34G1265 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 3.1e-13 78.6 79 57.0
Potri.018G042650 Populus trichocarpa HOM05D000433 ORTHO05D003991 4.0e-13 78.2 81 54.3
Solyc08g066710.2 Solanum lycopersicum HOM05D000433 ORTHO05D015038 6.9e-13 77.4 90 48.9
TWI34G0034 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 6.9e-13 77.4 88 53.4
Haze_16805 Corylus avellana HOM05D000433 ORTHO05D003991 1.2e-12 76.6 80 51.2
TWI34G1621 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 1.2e-12 76.6 79 54.4
Prupe.1G449300 Prunus persica HOM05D000433 ORTHO05D003991 1.5e-12 76.3 86 54.7
Potri.006G239300 Populus trichocarpa HOM05D000433 ORTHO05D003991 2.6e-12 75.5 80 55.0
Manes.16G076200 Manihot esculenta HOM05D000433 ORTHO05D003991 3.4e-12 75.1 90 54.4
TWI34G0984 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 1.0e-11 73.6 86 48.8
Sopen08g020690 Solanum pennellii HOM05D000433 ORTHO05D003991 2.2e-11 72.4 79 50.6
Sabra18G0043600 Salix brachista HOM05D000433 ORTHO05D003991 3.8e-11 71.6 86 45.3
Sabra06G0187000 Salix brachista HOM05D000433 ORTHO05D003991 6.5e-11 70.9 86 45.3
TAR383G1023 Trochodendron aralioides HOM05D000433 ORTHO05D003991 6.5e-11 70.9 87 46.0
Sabra18G0043100 Salix brachista HOM05D000433 ORTHO05D003991 8.4e-11 70.5 86 46.5
GSVIVG01035632001 Vitis vinifera HOM05D000433 ORTHO05D003991 8.4e-11 70.5 87 43.7
Cpa.g.sc7.267 Carica papaya HOM05D000433 ORTHO05D003991 1.1e-10 70.1 88 46.6
Migut.A00213 Erythranthe guttata HOM05D000433 ORTHO05D003991 1.1e-10 70.1 90 46.7
Sabra18G0043500 Salix brachista HOM05D000433 ORTHO05D003991 1.1e-10 70.1 86 44.2
CSS0016926 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 1.9e-10 69.3 82 45.1
Peaxi162Scf00323g00925 Petunia axillaris HOM05D000433 ORTHO05D003991 1.9e-10 69.3 88 50.0
FAN20G2606 Fragaria x ananassa HOM05D000433 ORTHO05D003991 4.2e-10 68.2 91 50.5
FvH4_2g35670 Fragaria vesca HOM05D000433 ORTHO05D003991 1.6e-09 66.2 91 49.5
Eucgr.C02921 Eucalyptus grandis HOM05D000433 ORTHO05D003991 2.1e-09 65.9 81 45.7
PSO210G3307 Papaver somniferum HOM05D000433 ORTHO05D003991 2.7e-09 65.5 78 44.9
MBI04_g27076_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D003991 7.9e-09 63.9 80 45.0
Manes.03G057900 Manihot esculenta HOM05D000433 ORTHO05D003991 7.9e-09 63.9 88 45.5
PGSC0003DMG400004311 Solanum tuberosum HOM05D000433 ORTHO05D003991 7.9e-09 63.9 90 45.6
Manes.03G057750 Manihot esculenta HOM05D000433 ORTHO05D003991 1.8e-08 62.8 86 43.0
DCAR_003121 Daucus carota HOM05D000433 ORTHO05D003991 2.3e-08 62.4 67 49.3
Oeu036367.1 Olea europaea HOM05D000433 ORTHO05D003991 3.9e-08 61.6 92 43.5
CSS0015925 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 5.1e-08 61.2 56 53.6
Cfa001732 Carpinus fangiana HOM05D000433 ORTHO05D003991 5.1e-08 61.2 51 54.9
HanXRQChr13g0401881 Helianthus annuus HOM05D000433 ORTHO05D003991 5.1e-08 61.2 75 45.3
Haze_21881 Corylus avellana HOM05D000433 ORTHO05D003991 8.7e-08 60.5 50 54.0
Dinv38696 Davidia involucrata HOM05D000433 ORTHO05D015038 8.7e-08 60.5 52 53.8
Phvul.009G109200 Phaseolus vulgaris HOM05D000433 ORTHO05D003991 8.7e-08 60.5 92 43.5
ECA233G3103 Erigeron canadensis HOM05D000433 ORTHO05D003991 1.1e-07 60.1 77 46.8
Lj1g0021560 Lotus japonicus HOM05D000433 ORTHO05D003991 1.1e-07 60.1 91 44.0
Prupe.1G449200 Prunus persica HOM05D000433 ORTHO05D003991 1.1e-07 60.1 89 43.8
FAN18G1489 Fragaria x ananassa HOM05D000433 ORTHO05D003991 1.5e-07 59.7 81 48.1
GSVIVG01035633001 Vitis vinifera HOM05D000433 ORTHO05D003991 1.9e-07 59.3 87 43.7
arahy.Tifrunner.gnm1.ann1.I9LXD5 Arachis hypogaea HOM05D000433 ORTHO05D003991 2.5e-07 58.9 68 44.1
PGSC0003DMG400004312 Solanum tuberosum HOM05D000433 ORTHO05D003991 3.3e-07 58.5 90 45.6
Atru.chr7.2097 Acer truncatum HOM05D000433 ORTHO05D003991 4.3e-07 58.2 87 42.5
VMungo1309G2807 Vigna mungo HOM05D000433 ORTHO05D003991 4.3e-07 58.2 94 42.6
MD15G1094300 Malus domestica HOM05D000433 ORTHO05D003991 5.7e-07 57.8 79 44.3
Glyma.04G083650 Glycine max HOM05D000433 ORTHO05D015038 7.4e-07 57.4 91 41.8
Lj7C703T4 Lonicera japonica HOM05D000433 ORTHO05D003991 9.6e-07 57.0 40 65.0
TAR383G0708 Trochodendron aralioides HOM05D000433 ORTHO05D003991 1.3e-06 56.6 44 61.4
Solyc11g071227.1 Solanum lycopersicum HOM05D000433 ORTHO05D003991 1.6e-06 56.2 88 43.2
Medtr3g110195 Medicago truncatula HOM05D000433 ORTHO05D003991 2.1e-06 55.8 90 41.1
GSVIVG01035636001 Vitis vinifera HOM05D000433 ORTHO05D003991 2.1e-06 55.8 49 53.1
FAN20G2984 Fragaria x ananassa HOM05D000433 ORTHO05D003991 2.8e-06 55.5 56 57.1
ATR0705G175 Amborella trichopoda HOM05D000433 ORTHO05D003991 3.7e-06 55.1 87 39.1
CAN.G335.8 Capsicum annuum HOM05D000433 ORTHO05D003991 4.8e-06 54.7 46 60.9
CAN.G792.2 Capsicum annuum HOM05D000433 ORTHO05D003991 4.8e-06 54.7 50 54.0
CAN.G792.3 Capsicum annuum HOM05D002518 ORTHO05D015038 4.8e-06 54.7 51 52.9
FvH4_2g35680 Fragaria vesca HOM05D000433 ORTHO05D003991 4.8e-06 54.7 55 56.4
FAN13G2375 Fragaria x ananassa HOM05D000433 ORTHO05D003991 4.8e-06 54.7 81 45.7
Glyma.06G085100 Glycine max HOM05D000433 ORTHO05D003991 4.8e-06 54.7 91 39.6
DCAR_003120 Daucus carota HOM05D000433 ORTHO05D003991 6.2e-06 54.3 89 41.6
FvH4_2g35681 Fragaria vesca HOM05D000433 ORTHO05D003991 6.2e-06 54.3 82 47.6
PGR044G1800 Punica granatum HOM05D000433 ORTHO05D003991 6.2e-06 54.3 65 50.8
Cpa.g.sc522.4 Carica papaya HOM05D000433 ORTHO05D003991 8.2e-06 53.9 53 45.3
RcHm_v2.0_Chr6g0306131 Rosa chinensis HOM05D000433 ORTHO05D003991 8.2e-06 53.9 40 62.5


User provided reference genes

Program Settings