Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 0.0e+00 1086.6 510 100.0
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.2e-278 962.6 510 89.4
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 8.0e-275 949.9 510 86.9
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 8.9e-274 946.4 510 86.5
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 6.4e-272 940.3 514 85.6
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.7e-264 915.6 510 83.7
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.4e-264 913.7 510 82.9
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 5.4e-263 910.6 510 83.3
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.1e-260 902.9 489 85.7
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 6.4e-232 807.4 513 72.7
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 3.0e-229 798.5 512 72.3
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 3.9e-229 798.1 521 72.2
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 7.4e-228 793.9 489 73.8
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.6e-227 792.7 470 77.2
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 8.1e-227 790.4 563 66.6
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 6.9e-226 787.3 478 75.1
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.2e-225 786.6 514 71.4
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 2.6e-225 785.4 492 74.4
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 3.4e-225 785.0 513 71.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 5.8e-225 784.3 458 77.7
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 7.6e-225 783.9 514 71.0
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.3e-224 783.1 511 71.6
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.4e-223 779.6 464 75.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 7.1e-223 777.3 445 77.8
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 7.9e-222 773.9 510 70.0
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.5e-220 769.6 514 68.7
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 3.3e-220 768.5 508 69.9
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 4.3e-220 768.1 468 74.8
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.6e-219 766.1 530 67.9
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 4.8e-219 764.6 510 70.2
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.8e-218 762.7 484 73.6
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 2.4e-218 762.3 438 77.2
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.1e-218 761.9 464 74.6
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 4.0e-218 761.5 466 74.0
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 6.9e-218 760.8 524 68.1
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.6e-217 758.8 503 69.4
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 2.2e-216 755.7 465 72.3
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 3.8e-216 755.0 469 73.1
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 4.9e-216 754.6 506 69.2
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 6.5e-216 754.2 429 78.6
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.1e-215 753.4 433 76.2
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.9e-215 752.7 454 74.2
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 4.2e-215 751.5 479 71.0
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.5e-214 748.4 487 70.8
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 7.9e-214 747.3 434 75.1
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 7.9e-214 747.3 500 69.0
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.0e-213 746.9 464 72.8
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.8e-213 746.1 484 70.9
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 2.3e-213 745.7 484 70.9
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 3.0e-213 745.3 471 71.8
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 3.9e-213 745.0 500 69.0
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.9e-212 742.7 513 67.4
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 2.5e-212 742.3 451 73.2
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 5.7e-212 741.1 495 68.9
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 7.4e-212 740.7 480 69.8
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 7.4e-212 740.7 501 68.5
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 2.1e-211 739.2 454 71.8
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 3.7e-211 738.4 483 70.0
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 4.8e-211 738.0 456 71.1
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 6.3e-211 737.6 465 70.8
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 8.2e-211 737.3 511 67.9
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.1e-210 736.9 485 69.9
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.1e-210 736.9 485 69.9
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.1e-210 736.9 491 69.5
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.5e-209 733.0 471 70.7
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 2.0e-209 732.6 425 75.8
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.6e-209 732.3 478 69.9
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 7.6e-209 730.7 463 71.9
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.1e-207 726.9 423 75.4
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.1e-207 726.9 534 65.0
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.4e-207 726.5 461 70.3
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 3.2e-207 725.3 468 69.7
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 3.2e-207 725.3 457 70.5
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 4.2e-207 724.9 434 74.9
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 4.2e-207 724.9 492 68.3
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 7.2e-207 724.2 433 73.7
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 9.3e-207 723.8 438 74.0
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 9.3e-207 723.8 428 75.2
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.7e-206 722.2 515 67.2
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 3.6e-206 721.8 489 67.9
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 3.6e-206 721.8 428 75.0
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 7.9e-206 720.7 509 65.6
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.5e-204 716.5 462 71.0
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.8e-203 711.4 468 69.2
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.4e-202 709.1 494 67.6
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.5e-201 706.4 512 66.0
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.3e-200 703.4 466 67.0
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 4.6e-198 694.9 442 70.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 7.9e-198 694.1 580 59.8
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.3e-197 692.6 425 72.0
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 3.9e-197 691.8 405 75.8
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 6.5e-192 674.5 517 61.9
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 3.2e-191 672.2 432 72.7
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 7.2e-191 671.0 378 78.8
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 1.0e-189 667.2 465 64.9
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.7e-188 661.4 462 63.4
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 5.9e-185 651.4 368 78.0
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 3.2e-183 645.6 513 60.4
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 9.4e-183 644.0 380 75.5
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 9.4e-183 644.0 380 75.5
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 7.5e-180 634.4 454 65.2
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 4.8e-179 631.7 510 60.2
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.4e-178 630.2 418 71.1
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-175 620.5 380 74.5
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 3.7e-171 605.5 363 74.7
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.1e-170 604.0 430 64.7
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.3e-168 597.0 325 80.6
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 2.3e-168 596.3 417 64.5
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 5.5e-167 591.7 639 50.7
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 5.2e-165 585.1 434 64.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.5e-164 583.6 414 66.4
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.0e-164 583.2 464 59.3
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.9e-159 566.6 472 55.3
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.1e-149 532.7 425 56.0
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.0e-145 520.0 396 57.6
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 3.0e-144 516.2 435 59.1
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.5e-143 513.8 321 70.4
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 4.0e-133 479.2 426 54.2
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 7.8e-129 464.9 267 75.3
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.9e-124 448.0 255 78.4
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.6e-102 377.5 218 76.6
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 2.1e-102 377.1 455 43.1
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-87 328.2 183 81.4
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.5e-76 291.2 162 80.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.5e-71 274.6 426 39.4
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.0e-68 264.2 148 79.1
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.0e-64 250.4 357 39.2
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.5e-59 232.6 171 66.7
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.0e-55 221.1 159 64.8
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.7e-54 218.0 110 81.8
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.3e-48 197.6 148 57.4
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.9e-46 189.9 118 72.0
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.8e-39 166.4 106 71.7
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.3e-38 165.2 111 66.7
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.2e-36 158.7 184 45.1
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 1.0e-35 155.6 187 47.6
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.3e-18 97.1 61 65.6
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 8.9e-16 89.4 60 60.0
Gohir.D13G185801 Gossypium hirsutum HOM05D034350 ORTHO05D048169 6.4e-14 83.2 61 72.1
Gorai.013G211800 Gossypium raimondii HOM05D034350 ORTHO05D048169 5.4e-13 80.1 61 68.9
Gohir.A04G094650 Gossypium hirsutum HOM05D034350 ORTHO05D006422 2.1e-09 68.2 58 63.8
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.2e-07 62.4 142 33.8
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 5.8e-07 60.1 41 63.4


User provided reference genes

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