Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G042300 Theobroma cacao HOM05D006865 ORTHO05D009005 3.8e-130 468.8 358 100.0
Duzib187G1827 Durio zibethinus HOM05D006865 ORTHO05D009005 7.7e-107 391.3 363 78.5
Manes.16G071500 Manihot esculenta HOM05D006865 ORTHO05D009005 6.4e-77 292.0 368 59.2
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 1.4e-76 290.8 269 85.1
Potri.006G240400 Populus trichocarpa HOM05D006865 ORTHO05D009005 7.8e-75 285.0 359 57.4
QL12p029455 Quercus lobata HOM05D006865 ORTHO05D009005 1.3e-74 284.3 349 57.6
Ciclev10008902m.g Citrus clementina HOM05D006865 ORTHO05D009005 2.3e-71 273.5 351 56.4
TWI63G0791 Tripterygium wilfordii HOM05D006865 ORTHO05D009005 5.4e-68 262.3 357 57.1
MD15G1095700 Malus domestica HOM05D006865 ORTHO05D009005 5.1e-66 255.8 346 61.8
CiPaw.07G205700 Carya illinoinensis HOM05D006865 ORTHO05D009005 5.6e-65 252.3 346 50.9
RcHm_v2.0_Chr6g0305961 Rosa chinensis HOM05D006865 ORTHO05D009005 7.3e-65 251.9 350 50.6
Atru.chr7.2136 Acer truncatum HOM05D006865 ORTHO05D009005 2.1e-64 250.4 359 54.6
CANSAT25G0847 Cannabis sativa HOM05D006865 ORTHO05D009005 3.1e-63 246.5 349 52.4
TAR636G1122 Trochodendron aralioides HOM05D006865 ORTHO05D009005 2.6e-62 243.4 368 59.8
FAN15G3339 Fragaria x ananassa HOM05D006865 ORTHO05D009005 3.4e-62 243.0 358 47.5
FAN27G2310 Fragaria x ananassa HOM05D006865 ORTHO05D009005 9.9e-62 241.5 360 48.9
FvH4_2g35860 Fragaria vesca HOM05D006865 ORTHO05D009005 8.4e-61 238.4 360 48.9
Sabra06G0188000 Salix brachista HOM05D006865 ORTHO05D009005 5.1e-58 229.2 224 58.9
PSO210G5031 Papaver somniferum HOM05D006865 ORTHO05D009005 6.6e-58 228.8 367 48.2
Lj8A588T26 Lonicera japonica HOM05D006865 ORTHO05D009005 9.6e-57 224.9 355 52.1
ClCG11G015200 Citrullus lanatus HOM05D006865 ORTHO05D009005 1.2e-56 224.6 345 48.1
PSO210G4422 Papaver somniferum HOM05D006865 ORTHO05D009005 6.2e-56 222.2 359 50.1
Cc08_g09210 Coffea canephora HOM05D006865 ORTHO05D009005 8.1e-56 221.9 371 53.6
CsaV3_3G048620 Cucumis sativus L. HOM05D006865 ORTHO05D009005 1.4e-55 221.1 345 47.0
Carub.0006s1002 Capsella rubella HOM05D006865 ORTHO05D009005 1.8e-55 220.7 364 48.6
AT5G11550 Arabidopsis thaliana HOM05D006865 ORTHO05D009005 4.0e-55 219.5 365 47.9
Haze_19694 Corylus avellana HOM05D006865 ORTHO05D009005 9.0e-55 218.4 344 51.2
Thhalv10014169m.g Eutrema salsugineum HOM05D006865 ORTHO05D009005 9.0e-55 218.4 358 48.9
Dinv30268 Davidia involucrata HOM05D006865 ORTHO05D009005 1.5e-54 217.6 346 48.8
Sp6g32050 Schrenkiella parvula HOM05D006865 ORTHO05D009005 1.5e-54 217.6 358 48.6
Cfa016677 Carpinus fangiana HOM05D006865 ORTHO05D009005 2.0e-54 217.2 344 51.7
CARHR201670 Cardamine hirsuta HOM05D006865 ORTHO05D009005 2.6e-54 216.9 363 47.7
Nn3g18133 Nelumbo nucifera HOM05D006865 ORTHO05D009005 2.6e-54 216.9 365 48.8
Nitab4.5_0001567g0190 Nicotiana tabacum HOM05D006865 ORTHO05D009005 2.6e-54 216.9 365 46.6
AL6G22220 Arabidopsis lyrata HOM05D006865 ORTHO05D009005 9.9e-54 214.9 364 47.3
A02p01060 Brassica napus HOM05D006865 ORTHO05D009005 2.9e-53 213.4 351 47.3
BraA02t05086Z Brassica rapa HOM05D006865 ORTHO05D009005 2.9e-53 213.4 351 47.3
BcaB08g37044 Brassica carinata HOM05D006865 ORTHO05D009005 3.8e-53 213.0 359 45.7
Peaxi162Scf00276g00123 Petunia axillaris HOM05D006865 ORTHO05D009005 3.8e-53 213.0 366 43.4
C02p05200 Brassica napus HOM05D006865 ORTHO05D009005 4.9e-53 212.6 349 47.3
Sed0006345 Sechium edule HOM05D006865 ORTHO05D009005 4.9e-53 212.6 356 44.4
Solyc11g071240.2 Solanum lycopersicum HOM05D006865 ORTHO05D009005 4.9e-53 212.6 364 44.2
BcaC04g19215 Brassica carinata HOM05D006865 ORTHO05D009005 8.4e-53 211.8 359 47.1
A10p26220 Brassica napus HOM05D006865 ORTHO05D009005 8.4e-53 211.8 359 47.4
C09p65260 Brassica napus HOM05D006865 ORTHO05D009005 8.4e-53 211.8 359 47.1
BraA10t44679Z Brassica rapa HOM05D006865 ORTHO05D009005 8.4e-53 211.8 359 47.4
BolC2t06470H Brassica oleracea HOM05D006865 ORTHO05D009005 1.4e-52 211.1 349 47.0
BcaC03g13374 Brassica carinata HOM05D006865 ORTHO05D009005 3.2e-52 209.9 356 46.1
MELO3C003458.2 Cucumis melo HOM05D006865 ORTHO05D009005 4.2e-52 209.5 345 49.0
BolC9t59354H Brassica oleracea HOM05D006865 ORTHO05D009005 9.3e-52 208.4 359 47.1
BcaNung01933 Brassica carinata HOM05D006865 ORTHO05D009005 1.6e-51 207.6 348 46.3
Nitab4.5_0000664g0200 Nicotiana tabacum HOM05D006865 ORTHO05D009005 1.6e-51 207.6 365 43.8
Hma1.2p1_1163F.1_g262770 Hydrangea macrophylla HOM05D006865 ORTHO05D009005 1.3e-50 204.5 352 44.9
THA.LOC104814775 Tarenaya hassleriana HOM05D006865 ORTHO05D009005 3.0e-50 203.4 355 44.5
DCAR_007711 Daucus carota HOM05D006865 ORTHO05D009005 3.9e-50 203.0 363 47.9
Prupe.1G450700 Prunus persica HOM05D006865 ORTHO05D009005 7.3e-49 198.7 337 43.3
PGR044G0390 Punica granatum HOM05D006865 ORTHO05D009005 7.3e-49 198.7 372 50.8
Lalb_Chr23g0269541 Lupinus albus HOM05D006865 ORTHO05D009005 2.1e-48 197.2 346 48.3
Aa31LG3G15650 Aethionema arabicum HOM05D006865 ORTHO05D009005 5.3e-47 192.6 348 46.3
Lj1g0027381 Lotus japonicus HOM05D006865 ORTHO05D009005 9.9e-46 188.3 345 45.2
HanXRQChr11g0351701 Helianthus annuus HOM05D006865 ORTHO05D009005 3.8e-45 186.4 368 44.0
SGA_v2.0_scaffold163G38079 Striga asiatica HOM05D006865 ORTHO05D009005 1.1e-44 184.9 339 42.8
Medtr3g110138 Medicago truncatula HOM05D006865 ORTHO05D009005 2.4e-44 183.7 345 49.0
MSTRG.14022 Avicennia marina HOM05D006865 ORTHO05D009005 3.2e-44 183.3 367 42.5
Migut.E01518 Erythranthe guttata HOM05D006865 ORTHO05D009005 3.2e-44 183.3 376 38.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 7.1e-44 182.2 261 48.7
AUR62009307 Chenopodium quinoa HOM05D006865 ORTHO05D009005 9.3e-44 181.8 347 45.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 3.5e-43 179.9 349 39.5
Oeu031553.1 Olea europaea HOM05D006865 ORTHO05D009005 4.6e-43 179.5 351 49.3
ECA248G0081 Erigeron canadensis HOM05D006865 ORTHO05D009005 1.0e-42 178.3 392 40.6
Lsat_1_v5_gn_1_49660 Lactuca sativa HOM05D006865 ORTHO05D009005 1.8e-42 177.6 364 47.5
CDE08G1680 Ceratophyllum demersum HOM05D006865 ORTHO05D009005 5.1e-42 176.0 360 39.2
EL10Ac2g04049 Beta vulgaris HOM05D006865 ORTHO05D009005 4.3e-41 172.9 357 43.1
Glyma.06G083600 Glycine max HOM05D006865 ORTHO05D009005 4.3e-41 172.9 352 44.9
Phvul.009G107700 Phaseolus vulgaris HOM05D006865 ORTHO05D009005 5.6e-41 172.6 355 43.9
VMungo1309G1411 Vigna mungo HOM05D006865 ORTHO05D009005 6.2e-40 169.1 370 43.0
Aqoxy7G03866 Aquilegia oxysepala HOM05D006865 ORTHO05D009005 2.4e-39 167.2 235 55.7
Medtr3g110088 Medicago truncatula HOM05D006865 ORTHO05D009005 4.5e-38 162.9 345 46.4
unitig_85.g27151 Utricularia gibba HOM05D006865 ORTHO05D009005 3.8e-37 159.8 267 40.8
Ca_15607_v3 Cicer arietinum L. HOM05D006865 ORTHO05D009005 8.4e-37 158.7 343 48.7
Sc23g0005180 Simmondsia chinensis HOM05D006865 ORTHO05D009005 8.4e-37 158.7 354 46.3
arahy.Tifrunner.gnm1.ann1.T16V0S Arachis hypogaea HOM05D006865 ORTHO05D009005 1.1e-36 158.3 335 54.3
Glyma.04G081900 Glycine max HOM05D006865 ORTHO05D009005 1.1e-36 158.3 358 39.1
arahy.Tifrunner.gnm1.ann1.ZC464Z Arachis hypogaea HOM05D006865 ORTHO05D009005 3.2e-36 156.8 335 53.1
CSS0046438 Camellia sinensis var. sinensis HOM05D006865 ORTHO05D009005 1.6e-35 154.5 201 57.7
TPR.G1329 Trifolium pratense HOM05D006865 ORTHO05D009005 6.9e-31 139.0 208 51.9
Sopen11g028930 Solanum pennellii HOM05D006865 ORTHO05D009005 3.4e-30 136.7 204 44.6
PGSC0003DMG400018564 Solanum tuberosum HOM05D006865 ORTHO05D009005 2.2e-29 134.0 204 44.1
BcaB01g05476 Brassica carinata HOM05D006865 ORTHO05D009005 1.8e-26 124.4 153 54.9
FAN03G0792 Fragaria x ananassa HOM05D006865 ORTHO05D009005 3.0e-26 123.6 189 47.6
FAN03G1515 Fragaria x ananassa HOM05D006865 ORTHO05D009005 3.0e-26 123.6 189 47.1
HPP92_023263 Vanilla planifolia HOM05D006865 ORTHO05D009005 1.9e-25 120.9 349 49.3
HPP92_023303 Vanilla planifolia HOM05D006865 ORTHO05D009005 1.9e-25 120.9 349 49.0
FAN02G1779 Fragaria x ananassa HOM05D006865 ORTHO05D009005 2.5e-25 120.6 189 47.1
Psat5g022760 Pisum sativum HOM05D006865 ORTHO05D009005 3.4e-22 110.2 162 46.3
Zm00001eb295560 Zea mays HOM05D006865 ORTHO05D009005 3.9e-18 96.7 362 42.3
BraA03t09843Z Brassica rapa HOM05D006865 ORTHO05D009005 2.2e-16 90.9 353 29.2
A03p05090 Brassica napus HOM05D011734 ORTHO05D009005 4.1e-15 86.7 185 40.0
BolC3t13095H Brassica oleracea HOM05D006865 ORTHO05D009005 4.1e-15 86.7 348 31.3
MBI01_g38802_MAGBIO Magnolia biondii HOM05D006865 ORTHO05D009005 3.8e-13 80.1 175 49.1
Os05g0559350 Oryza sativa ssp. japonica HOM05D006865 ORTHO05D009005 1.4e-12 78.2 201 36.8
Zm00001eb343440 Zea mays HOM05D006865 ORTHO05D009005 2.5e-12 77.4 361 38.0
Nn2g11491 Nelumbo nucifera HOM05D006865 ORTHO05D009005 1.0e-10 72.0 62 67.7
MBI01_g38801_MAGBIO Magnolia biondii HOM05D006865 ORTHO05D009005 1.5e-09 68.2 73 50.7
Nn2g10603 Nelumbo nucifera HOM05D006865 ORTHO05D009005 2.6e-09 67.4 62 61.3
Potri.018G039701 Populus trichocarpa HOM05D006865 ORTHO05D009005 3.3e-09 67.0 89 47.2
Nn5g30747 Nelumbo nucifera HOM05D006865 ORTHO05D009005 4.4e-09 66.6 50 74.0
Nn1g00141 Nelumbo nucifera HOM05D006865 ORTHO05D009005 1.2e-06 58.5 51 66.7
Nn6g34726 Nelumbo nucifera HOM05D006865 ORTHO05D009005 2.6e-06 57.4 56 58.9


User provided reference genes

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