Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.0e-247 858.6 420 100.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.6e-204 716.1 420 84.8
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 7.2e-197 690.6 412 83.7
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 6.1e-196 687.6 412 83.5
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 2.8e-188 662.1 359 89.1
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.8e-185 652.1 412 80.8
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 3.0e-174 615.5 356 83.7
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 8.3e-169 597.4 406 72.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.0e-166 589.0 351 77.8
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.3e-165 584.3 351 78.1
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 1.2e-164 583.6 350 78.9
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 8.1e-164 580.9 388 72.9
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.4e-163 580.1 407 71.3
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.8e-163 579.7 401 72.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.2e-162 577.0 405 69.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.5e-162 576.6 353 78.5
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 7.5e-162 574.3 397 71.5
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.3e-161 573.5 412 69.2
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.3e-161 573.5 426 69.2
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 2.2e-161 572.8 418 69.9
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 2.2e-161 572.8 400 71.5
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.9e-161 571.6 349 77.9
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.1e-160 570.5 349 77.9
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.1e-160 570.5 416 67.8
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.4e-160 570.1 400 71.0
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 2.4e-160 569.3 422 66.6
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 3.2e-160 568.9 388 71.1
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 4.1e-160 568.5 393 70.7
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.2e-159 567.0 415 68.0
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.5e-159 565.5 349 77.1
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 7.8e-159 564.3 414 68.8
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.3e-158 563.5 364 75.8
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.3e-158 563.5 417 68.6
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.3e-158 562.8 393 69.5
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.0e-158 562.4 349 75.1
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 3.9e-158 562.0 406 70.9
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 6.6e-158 561.2 379 70.7
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.1e-157 560.5 349 74.5
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.1e-157 560.5 385 70.9
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.5e-157 560.1 348 76.7
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 3.3e-157 558.9 349 74.2
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.6e-157 558.1 409 68.7
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 5.6e-157 558.1 367 74.1
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.6e-156 556.6 352 76.7
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.1e-156 556.2 425 66.8
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.1e-155 553.9 399 67.9
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.2e-154 550.4 481 60.7
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 9.9e-154 547.4 353 73.7
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 9.9e-154 547.4 352 75.3
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 2.9e-153 545.8 349 73.6
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 2.4e-152 542.7 351 74.9
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 9.2e-152 540.8 396 67.9
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 9.2e-152 540.8 352 74.1
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 9.2e-152 540.8 350 72.0
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 9.2e-152 540.8 350 72.3
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 2.3e-150 536.2 413 66.6
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.3e-150 536.2 375 69.1
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.6e-150 534.6 352 74.4
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 6.6e-150 534.6 350 73.7
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 6.6e-150 534.6 389 68.6
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.6e-150 534.3 304 81.6
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.3e-149 531.9 357 72.5
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 5.6e-149 531.6 351 71.8
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 9.6e-149 530.8 399 66.7
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.1e-148 529.6 305 81.3
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 2.1e-148 529.6 349 71.9
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 8.1e-148 527.7 349 73.4
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.1e-147 527.3 351 71.5
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.2e-146 523.9 348 73.6
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.6e-146 522.7 374 69.0
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 3.4e-146 522.3 412 63.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-145 520.4 341 72.4
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.3e-145 520.4 391 67.0
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.7e-145 520.0 334 74.9
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.2e-145 519.6 353 68.8
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 2.9e-145 519.2 322 76.1
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 4.9e-145 518.5 350 69.7
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 8.4e-145 517.7 303 77.9
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.1e-144 517.3 349 69.9
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.4e-144 516.9 410 63.7
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.4e-144 516.9 354 70.1
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 4.2e-144 515.4 351 69.2
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 7.1e-144 514.6 350 69.4
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.7e-143 512.7 349 71.3
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.5e-143 512.3 352 69.3
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 3.5e-143 512.3 333 72.4
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.7e-142 510.0 350 70.3
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 2.3e-142 509.6 350 67.7
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.3e-142 509.6 357 68.3
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.9e-142 508.8 392 65.1
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 8.7e-142 507.7 409 61.6
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.9e-141 506.5 347 69.5
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.3e-140 503.8 350 67.1
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.1e-140 503.1 304 77.3
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 2.1e-140 503.1 349 67.6
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 6.2e-140 501.5 358 67.0
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.4e-139 500.4 357 68.3
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 2.4e-139 499.6 371 63.9
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 2.6e-138 496.1 278 82.4
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 7.6e-138 494.6 349 67.6
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 9.9e-138 494.2 362 67.4
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 3.2e-136 489.2 316 75.0
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.7e-134 481.5 336 70.2
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.3e-133 478.8 312 72.8
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-132 477.2 330 67.9
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.8e-132 476.1 358 65.6
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.8e-132 476.1 322 71.1
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.4e-131 473.8 304 73.4
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.8e-131 473.4 263 84.4
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 3.8e-129 465.7 323 68.7
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 3.2e-128 462.6 323 68.1
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.2e-127 460.7 349 64.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.8e-123 446.8 331 66.8
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.2e-120 435.6 351 61.3
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 2.3e-118 429.9 324 64.2
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 9.0e-115 417.9 246 78.5
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 2.0e-114 416.8 307 66.4
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 4.5e-114 415.6 477 47.2
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.1e-111 406.8 378 57.4
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.6e-111 405.6 309 66.7
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.9e-109 400.2 250 73.2
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.9e-109 400.2 247 75.3
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.3e-109 399.1 221 85.1
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 4.3e-109 399.1 334 61.7
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.7e-109 398.7 382 53.4
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.4e-102 377.5 262 67.9
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.2e-100 370.2 249 73.5
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 6.3e-100 368.6 289 64.7
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 9.1e-99 364.8 382 53.9
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 5.9e-98 362.1 362 50.6
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.0e-97 361.3 405 48.1
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 9.4e-96 354.8 351 51.9
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.3e-94 350.1 211 74.9
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.2e-94 349.0 348 55.5
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.0e-90 337.0 358 49.2
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 3.5e-90 336.3 250 62.8
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.5e-88 330.9 276 59.8
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.4e-86 324.3 218 71.1
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 8.8e-86 321.6 298 51.3
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.2e-85 321.2 255 64.3
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-83 314.3 194 76.8
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.8e-83 313.9 304 54.3
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 2.5e-80 303.5 192 72.9
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.7e-77 292.4 194 73.2
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 2.8e-76 290.0 277 50.9
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 4.1e-75 286.2 334 50.9
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.9e-72 277.3 194 71.1
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 6.1e-63 245.7 134 85.8
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.2e-50 204.9 159 61.0
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.1e-48 198.4 116 80.2
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 3.3e-48 196.8 127 74.0
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.0e-45 187.6 342 39.8
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.6e-45 187.2 335 37.6
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.2e-44 184.1 235 48.1
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.9e-43 181.0 346 31.8
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 8.6e-41 172.2 213 40.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 4.4e-37 159.8 89 79.8
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.9e-35 154.5 302 28.5
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 6.0e-34 149.4 156 48.1
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.9e-24 117.9 207 32.4
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.7e-20 104.8 124 48.4
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.6e-18 98.2 82 61.0
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 3.7e-15 87.0 69 53.6
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 8.1e-15 85.9 69 53.6
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 9.0e-14 82.4 61 60.7
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 1.7e-12 78.2 49 73.5
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.9e-12 77.4 77 49.4
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.3e-11 72.4 66 59.1
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.9e-10 69.3 154 35.7
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 1.5e-08 65.1 57 57.9
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.9e-08 64.7 43 65.1
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 4.3e-08 63.5 46 60.9
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.4e-08 62.8 43 62.8
Glyma.04G081300 Glycine max HOM05D004081 ORTHO05D025646 1.8e-06 58.2 39 69.2


User provided reference genes

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