Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 1.0e-162 576.6 288 100.0
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 4.3e-148 528.1 295 89.2
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 5.6e-148 527.7 295 88.8
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 8.9e-146 520.4 295 88.5
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.2e-139 500.0 295 83.7
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.6e-139 499.6 295 83.7
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 2.8e-139 498.8 317 80.8
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 8.0e-139 497.3 295 83.4
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 1.1e-130 470.3 295 76.9
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 3.4e-129 465.3 296 77.7
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 7.5e-129 464.2 297 79.5
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 8.3e-128 460.7 296 77.7
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 2.4e-127 459.1 296 77.7
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 2.7e-126 455.7 295 78.3
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 4.6e-126 454.9 295 77.6
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 6.0e-126 454.5 297 76.1
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 1.7e-125 453.0 295 76.6
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 1.7e-125 453.0 295 76.6
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 1.1e-124 450.3 295 75.9
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 9.5e-124 447.2 295 75.9
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.4e-122 443.4 287 76.0
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 1.8e-122 443.0 294 75.2
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 2.3e-122 442.6 294 74.5
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 5.2e-122 441.4 278 78.8
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 1.5e-121 439.9 295 75.3
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 1.5e-121 439.9 292 75.3
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 2.6e-121 439.1 297 74.1
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 4.4e-121 438.3 295 74.2
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 4.4e-121 438.3 278 78.8
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 9.9e-121 437.2 295 74.6
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 1.7e-120 436.4 303 71.9
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 1.7e-120 436.4 297 75.4
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 2.2e-120 436.0 295 75.6
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 2.2e-120 436.0 295 73.6
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 2.9e-120 435.6 295 72.9
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 3.7e-120 435.3 295 74.6
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 3.7e-120 435.3 282 75.5
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 4.9e-120 434.9 296 74.7
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 6.4e-120 434.5 294 75.9
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 1.1e-119 433.7 294 74.8
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 9.2e-119 430.6 295 74.6
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 9.2e-119 430.6 295 72.9
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 1.6e-118 429.9 280 77.5
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 2.1e-118 429.5 304 71.1
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 2.7e-118 429.1 294 74.1
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 4.6e-118 428.3 293 72.4
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 6.0e-118 427.9 371 59.8
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 6.0e-118 427.9 292 73.3
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 6.0e-118 427.9 295 72.9
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 1.3e-117 426.8 304 70.7
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 1.3e-117 426.8 305 70.5
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 1.7e-117 426.4 295 72.2
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 3.0e-117 425.6 295 73.2
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 5.1e-117 424.9 308 70.5
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 6.6e-117 424.5 308 70.1
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 1.1e-116 423.7 300 71.0
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 1.5e-116 423.3 280 77.9
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 1.9e-116 422.9 297 72.1
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 5.6e-116 421.4 294 73.8
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 7.3e-116 421.0 297 71.7
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 9.6e-116 420.6 296 72.6
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 9.6e-116 420.6 294 73.1
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 9.6e-116 420.6 282 73.4
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 9.6e-116 420.6 308 69.5
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 1.2e-115 420.2 297 72.7
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 2.1e-115 419.5 280 77.9
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 4.7e-115 418.3 301 69.4
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 6.2e-115 417.9 280 73.9
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 1.4e-114 416.8 294 73.5
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 5.2e-114 414.8 296 72.6
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 5.2e-114 414.8 297 70.7
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 5.2e-114 414.8 449 53.0
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 5.2e-114 414.8 311 66.6
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 1.5e-113 413.3 304 70.4
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 2.6e-113 412.5 295 69.8
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 2.6e-113 412.5 296 72.3
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 2.6e-113 412.5 296 72.0
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 2.6e-113 412.5 296 72.3
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 9.9e-113 410.6 300 69.0
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 9.9e-113 410.6 296 71.6
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 2.9e-112 409.1 295 71.5
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 3.8e-112 408.7 296 69.9
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 4.9e-112 408.3 295 69.2
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.1e-111 407.1 276 72.5
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 5.4e-111 404.8 294 70.4
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 9.3e-111 404.1 302 66.2
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 2.1e-110 402.9 296 70.3
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 3.5e-110 402.1 297 69.4
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 1.3e-109 400.2 298 69.5
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 8.7e-109 397.5 276 72.8
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 4.3e-108 395.2 292 68.5
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 6.2e-107 391.3 298 69.5
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 2.6e-105 386.0 296 68.2
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 1.3e-104 383.6 299 68.6
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.9e-104 382.5 289 71.3
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 4.2e-103 378.6 274 71.5
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 6.6e-101 371.3 275 68.7
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 3.3e-100 369.0 285 67.0
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 4.0e-98 362.1 204 87.7
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 7.6e-97 357.8 275 70.2
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 4.9e-96 355.1 297 65.0
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 5.5e-95 351.7 293 65.9
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 9.3e-95 350.9 286 65.0
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 6.0e-94 348.2 247 71.7
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.1e-90 337.4 278 62.9
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.4e-90 337.0 278 62.6
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 7.6e-89 331.3 259 68.0
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 7.4e-84 314.7 213 75.1
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 9.0e-82 307.8 197 76.6
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 5.0e-80 302.0 260 61.9
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 6.5e-80 301.6 294 56.8
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.1e-78 296.6 294 56.5
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 8.7e-77 291.2 298 52.3
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 5.9e-73 278.5 273 53.1
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 8.5e-72 274.6 300 49.3
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 3.6e-70 269.2 271 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 2.0e-68 263.5 297 46.5
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 2.2e-67 260.0 255 61.2
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 1.8e-66 256.9 161 76.4
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 2.4e-66 256.5 278 49.6
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 5.0e-64 248.8 170 71.2
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 3.2e-63 246.1 278 46.4
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 6.7e-61 238.4 170 68.8
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 3.3e-60 236.1 275 48.0
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 3.7e-59 232.6 164 76.8
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 1.8e-58 230.3 273 48.0
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 4.1e-58 229.2 267 55.4
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 3.2e-55 219.5 218 59.6
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 1.2e-41 174.5 132 65.9
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 3.8e-40 169.5 117 71.8
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 4.5e-33 146.0 138 58.0
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 5.2e-21 105.9 238 39.5
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 5.2e-21 105.9 132 45.5
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 3.4e-20 103.2 84 63.1
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 6.4e-11 72.4 183 35.5


User provided reference genes

Program Settings