Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G038700 Theobroma cacao HOM05D000542 ORTHO05D000202 9.7e-43 177.2 152 100.0
Thecc.09G038800 Theobroma cacao HOM05D000542 ORTHO05D000202 2.6e-27 125.9 82 78.0
Duzib150G0871 Durio zibethinus HOM05D000542 ORTHO05D000202 3.5e-24 115.5 153 63.4
Duzib168G1394 Durio zibethinus HOM05D000542 ORTHO05D000202 1.9e-22 109.8 75 73.3
COL.COLO4_18704 Corchorus olitorius HOM05D000542 ORTHO05D000202 2.5e-22 109.4 74 74.3
Gorai.009G052100 Gossypium raimondii HOM05D000542 ORTHO05D000202 7.2e-22 107.8 71 74.6
Gorai.009G052200 Gossypium raimondii HOM05D000542 ORTHO05D000202 9.5e-22 107.5 70 74.3
Gohir.A05G048700 Gossypium hirsutum HOM05D000542 ORTHO05D000202 1.2e-21 107.1 70 74.3
Gohir.D05G050700 Gossypium hirsutum HOM05D000542 ORTHO05D000202 1.2e-21 107.1 71 73.2
Gohir.D05G050600 Gossypium hirsutum HOM05D000542 ORTHO05D000202 2.8e-21 105.9 71 73.2
CSS0015194 Camellia sinensis var. sinensis HOM05D000542 ORTHO05D000202 1.8e-20 103.2 75 65.3
Ciclev10008742m.g Citrus clementina HOM05D000542 ORTHO05D000202 3.4e-19 99.0 75 64.0
Potri.006G243600 Populus trichocarpa HOM05D000542 ORTHO05D000202 4.4e-19 98.6 75 62.7
Manes.03G066380 Manihot esculenta HOM05D000542 ORTHO05D000202 9.8e-19 97.4 75 62.7
COL.COLO4_18705 Corchorus olitorius HOM05D000542 ORTHO05D000202 1.7e-18 96.7 74 66.2
GSVIVG01035679001 Vitis vinifera HOM05D000542 ORTHO05D000202 1.8e-17 93.2 75 61.3
Potri.018G036700 Populus trichocarpa HOM05D000542 ORTHO05D000202 4.1e-17 92.0 75 58.7
TWI63G0293 Tripterygium wilfordii HOM05D000542 ORTHO05D000202 1.2e-16 90.5 74 56.8
Actinidia14657 Actinidia chinensis HOM05D000542 ORTHO05D000202 2.7e-16 89.4 71 62.0
TWI32G1221 Tripterygium wilfordii HOM05D000542 ORTHO05D000202 2.7e-16 89.4 74 56.8
Cfa013337 Carpinus fangiana HOM05D000542 ORTHO05D000202 4.5e-16 88.6 75 57.3
Haze_21829 Corylus avellana HOM05D000542 ORTHO05D000202 5.9e-16 88.2 75 56.0
Haze_21834 Corylus avellana HOM05D000542 ORTHO05D000202 5.9e-16 88.2 75 56.0
TAR383G0864 Trochodendron aralioides HOM05D000542 ORTHO05D000202 5.9e-16 88.2 71 60.6
Atru.chr7.2175 Acer truncatum HOM05D000542 ORTHO05D000202 7.8e-16 87.8 75 57.3
Atru.chr7.2292 Acer truncatum HOM05D000542 ORTHO05D000202 7.8e-16 87.8 75 57.3
FAN27G2567 Fragaria x ananassa HOM05D000542 ORTHO05D000202 1.0e-15 87.4 75 57.3
FAN20G0120 Fragaria x ananassa HOM05D000542 ORTHO05D000202 1.3e-15 87.0 75 57.3
Cpa.g.sc205.1 Carica papaya HOM05D000542 ORTHO05D000202 2.3e-15 86.3 101 61.4
Dinv14216 Davidia involucrata HOM05D000542 ORTHO05D000202 2.3e-15 86.3 66 62.1
Actinidia15724 Actinidia chinensis HOM05D000542 ORTHO05D000202 2.9e-15 85.9 73 58.9
Prupe.1G453500 Prunus persica HOM05D000542 ORTHO05D000202 2.9e-15 85.9 75 56.0
GSVIVG01035682001 Vitis vinifera HOM05D000542 ORTHO05D000202 2.9e-15 85.9 75 56.0
Atru.chr7.2173 Acer truncatum HOM05D000542 ORTHO05D000202 3.8e-15 85.5 75 57.3
Hma1.2p1_0140F.1_g063630 Hydrangea macrophylla HOM05D000542 ORTHO05D000202 5.0e-15 85.1 75 57.3
Rhsim07G0154100 Rhododendron simsii HOM05D000542 ORTHO05D000202 6.6e-15 84.7 76 59.2
FvH4_2g36250 Fragaria vesca HOM05D000542 ORTHO05D000202 8.6e-15 84.3 75 56.0
CiPaw.07G207900 Carya illinoinensis HOM05D000542 ORTHO05D000202 1.5e-14 83.6 76 55.3
Dinv14219 Davidia involucrata HOM05D000542 ORTHO05D000202 1.9e-14 83.2 75 56.0
Lj7C708T7 Lonicera japonica HOM05D000542 ORTHO05D000202 1.9e-14 83.2 75 54.7
Atru.chr7.2289 Acer truncatum HOM05D000542 ORTHO05D000202 3.3e-14 82.4 73 56.2
Atru.chr7.2290 Acer truncatum HOM05D000542 ORTHO05D000202 4.3e-14 82.0 62 64.5
Sed0010077 Sechium edule HOM05D000542 ORTHO05D000202 4.3e-14 82.0 75 57.3
Actinidia14658 Actinidia chinensis HOM05D000542 ORTHO05D000202 7.3e-14 81.3 74 56.8
QL12p026208 Quercus lobata HOM05D000542 ORTHO05D000202 7.3e-14 81.3 94 46.8
Lalb_Chr08g0243311 Lupinus albus HOM05D000542 ORTHO05D000202 1.6e-13 80.1 75 52.0
Lj8C694T2 Lonicera japonica HOM05D000542 ORTHO05D000202 2.8e-13 79.3 75 52.0
Actinidia12835 Actinidia chinensis HOM05D000542 ORTHO05D000202 3.6e-13 79.0 71 54.9
Glyma.06G081100 Glycine max HOM05D000542 ORTHO05D000202 3.6e-13 79.0 71 53.5
Manes.16G066600 Manihot esculenta HOM05D000542 ORTHO05D000202 3.6e-13 79.0 71 53.5
VMungo1309G0525 Vigna mungo HOM05D000542 ORTHO05D000202 4.7e-13 78.6 71 54.9
Lj8A690T43 Lonicera japonica HOM05D000542 ORTHO05D000202 6.1e-13 78.2 75 50.7
Glyma.04G079600 Glycine max HOM05D000542 ORTHO05D000202 8.0e-13 77.8 71 50.7
Glyma.14G141000 Glycine max HOM05D000542 ORTHO05D000202 1.4e-12 77.0 76 55.3
Lj8A691T19 Lonicera japonica HOM05D000542 ORTHO05D000202 1.8e-12 76.6 73 50.7
EL10Ac2g04088 Beta vulgaris HOM05D000542 ORTHO05D000202 3.0e-12 75.9 76 51.3
DCAR_000738 Daucus carota HOM05D000542 ORTHO05D000202 4.0e-12 75.5 72 51.4
MSTRG.25897 Avicennia marina HOM05D000542 ORTHO05D000202 5.2e-12 75.1 73 53.4
Lj1g0008280 Lotus japonicus HOM05D000542 ORTHO05D000202 6.8e-12 74.7 76 51.3
TAR624G0341 Trochodendron aralioides HOM05D000542 ORTHO05D000202 6.8e-12 74.7 71 53.5
arahy.Tifrunner.gnm1.ann1.NG4XB7 Arachis hypogaea HOM05D000542 ORTHO05D000202 1.2e-11 73.9 72 54.2
Eucgr.C02887 Eucalyptus grandis HOM05D000542 ORTHO05D000202 1.2e-11 73.9 77 53.2
Lj8C692T1 Lonicera japonica HOM05D000542 ORTHO05D000202 1.5e-11 73.6 68 52.9
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 2.0e-11 73.2 74 51.4
Lj1g0023869 Lotus japonicus HOM05D000542 ORTHO05D000202 2.0e-11 73.2 75 49.3
Hund19556 Selenicereus undatus HOM05D000542 ORTHO05D000202 2.0e-11 73.2 76 48.7
MD15G1098800 Malus domestica HOM05D000542 ORTHO05D000202 3.4e-11 72.4 75 53.3
Phvul.008G158600 Phaseolus vulgaris HOM05D000542 ORTHO05D000202 4.4e-11 72.0 73 53.4
Sabra06G0190800 Salix brachista HOM05D000542 ORTHO05D000202 4.4e-11 72.0 121 37.2
AUR62023032 Chenopodium quinoa HOM05D000542 ORTHO05D000202 7.5e-11 71.2 76 50.0
AUR62044620 Chenopodium quinoa HOM05D000542 ORTHO05D000202 7.5e-11 71.2 76 50.0
Cc08_g08460 Coffea canephora HOM05D000542 ORTHO05D000202 7.5e-11 71.2 66 57.6
Sabra18G0037300 Salix brachista HOM05D000542 ORTHO05D000202 7.5e-11 71.2 61 57.4
MELO3C003592.2 Cucumis melo HOM05D000542 ORTHO05D000202 9.8e-11 70.9 72 51.4
Hma1.2p1_0003F.1_g003730 Hydrangea macrophylla HOM05D000542 ORTHO05D000202 9.8e-11 70.9 79 51.9
Lj8A693G8 Lonicera japonica HOM05D000542 ORTHO05D000202 9.8e-11 70.9 73 52.1
Medtr1g008500 Medicago truncatula HOM05D000542 ORTHO05D000202 9.8e-11 70.9 75 49.3
Medtr3g109490 Medicago truncatula HOM05D000542 ORTHO05D000202 9.8e-11 70.9 75 48.0
Nitab4.5_0000250g0250 Nicotiana tabacum HOM05D000542 ORTHO05D000202 9.8e-11 70.9 79 53.2
PGR044G1623 Punica granatum HOM05D000542 ORTHO05D000202 9.8e-11 70.9 71 49.3
Oeu027036.1 Olea europaea HOM05D000542 ORTHO05D000202 1.3e-10 70.5 68 51.5
Phvul.009G105300 Phaseolus vulgaris HOM05D000542 ORTHO05D000202 1.3e-10 70.5 72 51.4
AUR62009353 Chenopodium quinoa HOM05D000542 ORTHO05D000202 2.2e-10 69.7 76 50.0
Nitab4.5_0001403g0020 Nicotiana tabacum HOM05D000542 ORTHO05D000202 2.2e-10 69.7 80 51.2
BcaB04g19783 Brassica carinata HOM05D000542 ORTHO05D000202 2.9e-10 69.3 67 49.3
Hund23043 Selenicereus undatus HOM05D000542 ORTHO05D000202 2.9e-10 69.3 78 46.2
TPR.G1345 Trifolium pratense HOM05D000542 ORTHO05D000202 3.7e-10 68.9 60 55.0
Glyma.14G140900 Glycine max HOM05D000542 ORTHO05D000202 4.9e-10 68.6 76 46.1
Hma1.2p1_0450F.1_g155650 Hydrangea macrophylla HOM05D000542 ORTHO05D000202 4.9e-10 68.6 72 52.8
Lj8A691G18 Lonicera japonica HOM05D000542 ORTHO05D000202 4.9e-10 68.6 62 54.8
Aqoxy7G01674 Aquilegia oxysepala HOM05D000542 ORTHO05D000202 6.4e-10 68.2 72 52.8
BolC2t12005H Brassica oleracea HOM05D000542 ORTHO05D000202 8.3e-10 67.8 69 47.8
BcaC03g17899 Brassica carinata HOM05D000542 ORTHO05D000202 1.1e-09 67.4 69 47.8
C02p59420 Brassica napus HOM05D000542 ORTHO05D000202 1.1e-09 67.4 69 47.8
BraA02t08930Z Brassica rapa HOM05D000542 ORTHO05D000202 1.1e-09 67.4 69 47.8
Peaxi162Scf00105g00026 Petunia axillaris HOM05D000542 ORTHO05D000202 1.1e-09 67.4 74 48.6
BcaB04g19775 Brassica carinata HOM05D000542 ORTHO05D000202 1.4e-09 67.0 67 49.3
Thhalv10004736m.g Eutrema salsugineum HOM05D000542 ORTHO05D000202 1.8e-09 66.6 67 47.8
A09p06140 Brassica napus HOM05D000542 ORTHO05D000202 2.4e-09 66.2 67 47.8
TPR.G11983 Trifolium pratense HOM05D000542 ORTHO05D000202 2.4e-09 66.2 75 48.0
Cc08_g08470 Coffea canephora HOM05D000542 ORTHO05D000202 4.1e-09 65.5 75 44.0
DCAR_004505 Daucus carota HOM05D000542 ORTHO05D000202 4.1e-09 65.5 71 46.5
A02p39640 Brassica napus HOM05D000542 ORTHO05D000202 5.4e-09 65.1 69 46.4
SalBow4G2992 Salvia bowleyana HOM05D000542 ORTHO05D000202 5.4e-09 65.1 59 54.2
Sopen08g022010 Solanum pennellii HOM05D000542 ORTHO05D000202 7.0e-09 64.7 72 51.4
C09p06770 Brassica napus HOM05D000542 ORTHO05D000202 9.2e-09 64.3 67 46.3
BolC9t53598H Brassica oleracea HOM05D000542 ORTHO05D000202 9.2e-09 64.3 67 46.3
THA.LOC104799209 Tarenaya hassleriana HOM05D000542 ORTHO05D000202 9.2e-09 64.3 70 51.4
Sp2g21920 Schrenkiella parvula HOM05D000542 ORTHO05D000202 1.2e-08 63.9 67 46.3
Solyc08g068150.4 Solanum lycopersicum HOM05D000542 ORTHO05D000202 1.6e-08 63.5 102 40.2
Hund03445 Selenicereus undatus HOM05D000542 ORTHO05D000202 2.7e-08 62.8 76 50.0
Sc09g0009050 Simmondsia chinensis HOM05D000542 ORTHO05D000202 4.6e-08 62.0 77 49.4
PGSC0003DMG400014509 Solanum tuberosum HOM05D000542 ORTHO05D000202 4.6e-08 62.0 72 50.0
Aa31LG11G4660 Aethionema arabicum HOM05D000542 ORTHO05D000202 5.9e-08 61.6 67 49.3
BcaB07g29988 Brassica carinata HOM05D000542 ORTHO05D000202 5.9e-08 61.6 64 45.3
HanXRQChr01g0029501 Helianthus annuus HOM05D000542 ORTHO05D000202 5.9e-08 61.6 71 43.7
HanXRQChr01g0029521 Helianthus annuus HOM05D000542 ORTHO05D000202 7.8e-08 61.2 71 43.7
ECA248G3861 Erigeron canadensis HOM05D000542 ORTHO05D000202 1.0e-07 60.8 75 44.0
HanXRQChr01g0029491 Helianthus annuus HOM05D000542 ORTHO05D000202 1.0e-07 60.8 71 42.3
A06p36310 Brassica napus HOM05D000542 ORTHO05D000202 1.3e-07 60.5 75 41.3
BraA09t36256Z Brassica rapa HOM05D000542 ORTHO05D000202 1.7e-07 60.1 66 45.5
Lsat_1_v5_gn_1_48880 Lactuca sativa HOM05D000542 ORTHO05D000202 2.3e-07 59.7 72 45.8
Medtr1g008590 Medicago truncatula HOM05D000542 ORTHO05D000202 2.3e-07 59.7 74 44.6
TAR624G1414 Trochodendron aralioides HOM05D000542 ORTHO05D000202 3.0e-07 59.3 64 51.6
CANSAT35G0422 Cannabis sativa HOM05D000542 ORTHO05D000202 3.9e-07 58.9 58 55.2
CARHR187720 Cardamine hirsuta HOM05D000542 ORTHO05D000202 3.9e-07 58.9 76 43.4
SGA_v2.0_scaffold243G44299 Striga asiatica HOM05D000542 ORTHO05D000202 3.9e-07 58.9 77 42.9
BcaNung04845 Brassica carinata HOM05D000542 ORTHO05D000202 5.0e-07 58.5 67 44.8
CANSAT25G3434 Cannabis sativa HOM05D000542 ORTHO05D000202 5.0e-07 58.5 66 53.0
CAN.G1060.2 Capsicum annuum HOM05D000542 ORTHO05D000202 5.0e-07 58.5 64 56.2
HanXRQChr02g0048371 Helianthus annuus HOM05D000542 ORTHO05D000202 6.6e-07 58.2 61 49.2
PSO782G5471 Papaver somniferum HOM05D000542 ORTHO05D000202 6.6e-07 58.2 81 42.0
PSO198G0076 Papaver somniferum HOM05D000542 ORTHO05D000202 8.6e-07 57.8 81 40.7
Prupe.1G477000 Prunus persica HOM05D000542 ORTHO05D000202 8.6e-07 57.8 76 44.7
vmacro05356 Vaccinium macrocarpon HOM05D000542 ORTHO05D000202 8.6e-07 57.8 64 50.0
Os01g0733500 Oryza sativa ssp. japonica HOM05D000542 ORTHO05D000202 1.1e-06 57.4 75 41.3
TPR.G11992 Trifolium pratense HOM05D000542 ORTHO05D000202 1.1e-06 57.4 74 44.6
AL6G37440 Arabidopsis lyrata HOM05D000542 ORTHO05D000202 2.5e-06 56.2 70 44.3
GSVIVG01015390001 Vitis vinifera HOM05D000542 ORTHO05D000202 2.5e-06 56.2 74 40.5
MBI04_g19380_MAGBIO Magnolia biondii HOM05D000542 ORTHO05D000202 3.3e-06 55.8 71 43.7
vmacro05355 Vaccinium macrocarpon HOM05D000542 ORTHO05D000202 4.3e-06 55.5 65 50.8
AT5G25610 Arabidopsis thaliana HOM05D000542 ORTHO05D000202 5.6e-06 55.1 75 41.3
Psat6g033920 Pisum sativum HOM05D000542 ORTHO05D000202 5.6e-06 55.1 71 40.8
vmacro22208 Vaccinium macrocarpon HOM05D000542 ORTHO05D000202 7.3e-06 54.7 63 52.4
vmacro23259 Vaccinium macrocarpon HOM05D000542 ORTHO05D000202 7.3e-06 54.7 67 49.3
GSVIVG01035680001 Vitis vinifera HOM05D000542 ORTHO05D000202 7.3e-06 54.7 48 56.2
Lsat_1_v5_gn_1_48900 Lactuca sativa HOM05D000542 ORTHO05D000202 9.5e-06 54.3 63 47.6
Lsat_1_v5_gn_1_48980 Lactuca sativa HOM05D000542 ORTHO05D000202 9.5e-06 54.3 59 50.8
Zm00001eb154060 Zea mays HOM05D000542 ORTHO05D000202 9.5e-06 54.3 74 40.5


User provided reference genes

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