Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 3.2e-95 351.7 170 100.0
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 9.7e-92 340.1 168 96.4
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 2.6e-89 332.0 169 94.7
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 5.5e-87 324.3 165 93.3
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 2.7e-86 322.0 168 91.1
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 4.7e-86 321.2 170 90.6
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 6.1e-86 320.9 167 89.8
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 7.9e-86 320.5 168 91.1
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 7.9e-86 320.5 166 90.4
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 3.9e-85 318.2 170 87.6
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 2.6e-84 315.5 170 86.5
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 4.4e-84 314.7 168 88.1
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 4.4e-84 314.7 170 87.6
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 5.7e-84 314.3 168 89.3
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 2.2e-83 312.4 170 86.5
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 2.8e-83 312.0 170 86.5
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 3.7e-83 311.6 170 86.5
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 3.7e-83 311.6 170 86.5
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 4.8e-83 311.2 170 87.1
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 8.2e-83 310.5 170 86.5
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 1.1e-82 310.1 170 86.5
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 1.4e-82 309.7 171 87.7
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 1.4e-82 309.7 170 87.6
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 4.1e-82 308.1 169 85.8
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 7.0e-82 307.4 166 86.7
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 9.1e-82 307.0 170 85.3
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 9.1e-82 307.0 171 86.5
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.2e-81 306.6 164 89.0
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 1.2e-81 306.6 166 87.3
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 1.6e-81 306.2 171 86.5
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 3.5e-81 305.1 168 83.9
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 5.9e-81 304.3 167 86.2
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 1.3e-80 303.1 168 84.5
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 2.2e-80 302.4 166 85.5
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 2.9e-80 302.0 168 83.9
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 3.8e-80 301.6 170 82.9
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 1.1e-79 300.1 167 83.2
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 1.1e-79 300.1 170 82.9
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 1.1e-79 300.1 171 84.2
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 1.1e-79 300.1 168 82.7
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 3.2e-79 298.5 170 84.7
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 3.2e-79 298.5 171 83.6
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 4.2e-79 298.1 165 87.3
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 4.2e-79 298.1 168 82.1
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 5.5e-79 297.7 168 83.3
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 1.2e-78 296.6 171 82.5
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 2.1e-78 295.8 168 82.1
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 2.7e-78 295.4 169 81.7
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 3.6e-78 295.0 170 82.9
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 4.7e-78 294.7 171 81.9
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 6.1e-78 294.3 161 85.7
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 3.0e-77 292.0 165 83.0
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 3.0e-77 292.0 170 81.8
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 4.0e-77 291.6 164 85.4
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 5.2e-77 291.2 172 81.4
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 8.8e-77 290.4 168 81.0
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 8.8e-77 290.4 165 83.0
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 1.1e-76 290.0 173 81.5
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 1.1e-76 290.0 170 82.4
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.1e-76 290.0 165 81.2
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.1e-76 290.0 165 81.2
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 2.6e-76 288.9 171 82.5
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 5.7e-76 287.7 155 86.5
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 7.5e-76 287.3 164 84.1
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 9.7e-76 287.0 165 82.4
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 9.7e-76 287.0 173 79.2
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 1.3e-75 286.6 155 85.8
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 1.7e-75 286.2 173 79.8
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 2.2e-75 285.8 169 78.7
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 2.8e-75 285.4 153 87.6
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 4.8e-75 284.6 161 84.5
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 1.1e-74 283.5 158 84.8
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 1.4e-74 283.1 153 86.3
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 1.4e-74 283.1 167 80.2
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 2.4e-74 282.3 165 80.0
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 2.4e-74 282.3 168 80.4
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 3.1e-74 282.0 174 77.6
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 9.1e-74 280.4 165 80.0
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 9.1e-74 280.4 165 80.6
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 1.0e-72 276.9 163 79.1
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 2.2e-72 275.8 170 79.4
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.2e-72 275.8 151 84.8
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 2.2e-72 275.8 166 78.9
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 8.5e-72 273.9 163 80.4
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 1.5e-71 273.1 164 78.0
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 2.5e-71 272.3 164 79.9
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 3.2e-71 271.9 170 78.2
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 5.5e-71 271.2 160 81.2
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 9.4e-71 270.4 166 75.3
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 2.7e-70 268.9 165 77.0
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 4.7e-70 268.1 156 79.5
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 8.0e-70 267.3 188 71.8
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 3.0e-69 265.4 153 81.7
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 4.0e-69 265.0 168 76.2
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 5.2e-69 264.6 165 75.8
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 1.2e-68 263.5 139 87.8
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 1.2e-68 263.5 139 87.8
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 1.2e-68 263.5 165 77.0
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.6e-68 262.3 151 82.1
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 3.4e-68 261.9 158 79.1
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 5.7e-68 261.2 151 81.5
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 2.8e-67 258.8 166 74.1
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 4.8e-67 258.1 151 80.8
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 8.3e-67 257.3 171 72.5
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 1.8e-66 256.1 162 77.8
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 5.4e-66 254.6 166 78.9
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 3.5e-65 251.9 180 72.2
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 3.5e-65 251.9 189 66.1
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 2.2e-59 232.6 150 72.7
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 5.4e-58 228.0 142 78.9
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 5.4e-58 228.0 316 43.7
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.0e-57 226.1 151 70.9
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 7.7e-57 224.2 121 83.5
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 1.3e-56 223.4 158 69.6
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.9e-55 219.5 113 92.0
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 4.3e-55 218.4 141 74.5
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 9.5e-55 217.2 134 79.1
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.1e-54 216.1 157 63.7
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 1.5e-47 193.4 170 60.0
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 3.6e-46 188.7 308 40.9
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 4.9e-43 178.3 222 48.2
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 6.6e-40 167.9 203 47.8
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 4.3e-31 138.7 76 81.6
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.2e-30 137.1 84 82.1
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.1e-29 134.0 80 73.8
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 2.4e-26 122.9 67 86.6
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 8.9e-21 104.4 79 59.5
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 1.3e-14 84.0 44 77.3
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 6.2e-14 81.6 69 52.2
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 1.3e-11 73.9 88 44.3
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 1.7e-11 73.6 81 53.1
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 4.6e-09 65.5 119 34.5
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.1e-07 60.8 38 71.1


User provided reference genes

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