Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.3e-202 709.5 351 100.0
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.0e-167 593.6 354 84.7
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.8e-164 582.8 365 81.9
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.4e-145 520.0 351 77.8
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 4.1e-145 518.5 348 75.0
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 3.3e-142 508.8 344 75.6
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 4.0e-140 501.9 345 71.6
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.2e-138 496.1 282 86.5
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 8.3e-138 494.2 347 71.2
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 1.4e-137 493.4 347 70.6
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 4.3e-134 481.9 344 70.3
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 2.1e-133 479.6 350 69.4
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 8.0e-133 477.6 348 69.3
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.8e-132 476.5 341 68.6
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.3e-130 470.3 348 68.4
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 6.4e-130 468.0 392 62.2
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 2.4e-129 466.1 350 67.4
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 3.2e-129 465.7 353 64.6
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.2e-128 463.8 353 63.7
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 3.9e-127 458.8 313 69.0
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 3.9e-127 458.8 318 71.7
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 5.0e-127 458.4 346 66.2
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 8.6e-127 457.6 412 60.0
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 8.6e-127 457.6 412 60.0
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.5e-126 456.8 401 60.6
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 4.3e-126 455.3 347 66.0
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 3.6e-125 452.2 352 66.2
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 6.2e-125 451.4 350 64.6
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 8.9e-124 447.6 348 65.2
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 7.5e-123 444.5 355 64.8
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 9.8e-123 444.1 321 66.7
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 2.2e-122 443.0 313 67.1
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.9e-122 442.6 348 64.9
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.7e-122 442.2 292 73.3
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 4.9e-122 441.8 327 67.6
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.1e-121 440.7 350 64.3
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.4e-121 439.5 354 65.0
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 3.2e-121 439.1 344 67.2
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 3.2e-121 439.1 349 64.2
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 4.1e-121 438.7 332 64.8
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.3e-119 433.7 361 62.9
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 3.0e-119 432.6 312 66.7
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 9.5e-118 427.6 349 63.6
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.2e-117 427.2 310 67.4
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.1e-117 426.4 263 77.9
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.8e-117 426.0 348 62.1
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.3e-116 422.9 408 57.1
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.3e-116 422.9 326 66.0
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.3e-116 422.9 326 66.0
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 8.9e-116 421.0 389 57.8
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.3e-114 417.2 359 61.0
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 4.9e-114 415.2 235 84.7
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 6.0e-112 408.3 418 52.4
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.3e-111 407.1 299 66.2
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 3.9e-111 405.6 318 62.6
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.3e-110 402.1 310 61.3
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.6e-109 400.2 319 63.0
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 4.7e-109 398.7 313 62.3
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 3.1e-108 396.0 322 62.4
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 4.0e-108 395.6 316 63.0
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 5.8e-107 391.7 319 63.3
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 2.2e-106 389.8 317 62.8
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 2.2e-106 389.8 353 58.4
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 3.8e-106 389.0 321 61.4
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 1.1e-105 387.5 394 52.5
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.2e-105 386.0 328 58.8
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 4.2e-105 385.6 316 61.7
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 9.3e-105 384.4 276 67.0
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 3.5e-104 382.5 348 59.2
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.3e-103 380.6 326 58.3
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 3.9e-103 379.0 320 60.0
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 6.6e-103 378.3 283 64.0
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 8.7e-103 377.9 285 63.2
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.1e-102 377.5 302 63.2
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 7.3e-102 374.8 330 59.1
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 4.8e-101 372.1 278 67.3
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 8.1e-101 371.3 329 59.3
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 9.0e-100 367.9 353 54.1
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 9.0e-100 367.9 308 59.7
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 9.0e-100 367.9 308 59.7
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.5e-99 367.1 331 57.7
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 3.2e-97 359.4 328 54.9
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 9.3e-97 357.8 220 79.1
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 9.3e-97 357.8 240 72.1
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.1e-96 356.7 306 58.2
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 3.5e-96 355.9 337 54.9
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.1e-94 350.9 276 60.5
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 6.9e-92 341.7 227 73.6
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.1e-89 334.3 233 69.1
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 2.4e-89 333.2 239 68.2
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.5e-88 329.3 309 55.0
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.1e-87 325.5 222 69.4
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.9e-86 323.6 309 54.0
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.1e-85 320.1 363 49.0
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 4.0e-84 315.8 334 48.5
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.7e-82 310.5 240 64.2
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 2.9e-82 309.7 237 62.4
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 3.2e-81 306.2 225 67.6
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 5.5e-81 305.4 223 65.9
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 7.9e-80 301.6 307 52.1
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 3.0e-79 299.7 349 49.0
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 1.3e-77 294.3 338 47.9
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.2e-73 279.6 319 50.8
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.1e-72 276.9 309 46.6
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.5e-72 276.2 242 57.9
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.3e-71 274.2 179 73.7
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 4.3e-70 269.2 316 49.1
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.8e-68 263.8 340 42.1
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 1.2e-64 251.1 150 75.3
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.2e-64 251.1 310 42.9
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 4.3e-62 242.7 161 75.8
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 3.1e-60 236.5 203 55.7
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.2e-59 234.6 261 50.2
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.2e-56 224.6 159 65.4
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 3.0e-55 219.9 181 63.5
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 3.1e-52 209.9 225 52.0
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 5.9e-51 205.7 278 42.1
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 5.2e-47 192.6 141 68.8
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 6.7e-47 192.2 123 70.7
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.3e-45 188.0 171 55.6
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 3.7e-37 159.8 100 72.0
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 3.1e-36 156.8 115 71.3
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 1.2e-35 154.8 177 48.6
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.7e-32 143.7 82 82.9
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 8.8e-31 138.7 105 66.7
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 3.5e-27 126.7 102 63.7
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.1e-17 95.1 79 55.7
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 2.8e-16 90.5 88 50.0
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 8.9e-15 85.5 70 67.1
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.4e-14 83.2 103 46.6
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.3e-13 81.6 70 67.1
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 8.3e-13 79.0 85 50.6
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.6e-11 74.7 68 48.5
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 4.6e-11 73.2 76 57.9
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.0e-10 72.0 51 70.6
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 9.5e-09 65.5 64 59.4
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 7.5e-06 55.8 43 51.2


User provided reference genes

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