Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 6.0e-121 437.6 228 100.0
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 5.8e-108 394.4 228 90.8
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 5.8e-108 394.4 228 89.0
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 2.2e-107 392.5 228 88.6
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 2.1e-105 386.0 228 85.5
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 1.4e-101 373.2 221 89.6
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 8.4e-91 337.4 228 79.8
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 6.0e-89 331.3 232 75.0
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 1.1e-85 320.5 231 70.6
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 5.3e-85 318.2 231 70.1
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 1.2e-84 317.0 231 70.1
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 2.0e-84 316.2 231 69.7
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 1.0e-83 313.9 231 69.3
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 6.5e-83 311.2 228 73.2
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 1.1e-82 310.5 231 69.7
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 9.3e-82 307.4 231 69.3
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.2e-81 307.0 231 69.7
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 1.2e-81 307.0 227 70.9
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 2.1e-81 306.2 230 70.4
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 2.7e-81 305.8 228 69.7
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 4.6e-81 305.1 231 68.4
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 7.9e-81 304.3 233 68.2
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 2.3e-80 302.8 229 66.8
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 1.5e-79 300.1 228 70.6
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 1.9e-79 299.7 233 68.7
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 2.5e-79 299.3 231 67.1
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 3.3e-79 298.9 231 66.7
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 7.4e-79 297.7 227 68.3
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 1.3e-78 297.0 231 66.2
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 2.8e-78 295.8 232 67.2
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 3.7e-78 295.4 226 68.1
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 4.8e-78 295.0 231 69.7
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 6.3e-78 294.7 228 67.1
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 6.3e-78 294.7 231 65.8
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 1.4e-77 293.5 232 66.8
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 1.8e-77 293.1 228 65.4
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 4.1e-77 292.0 228 66.7
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 6.9e-77 291.2 233 64.4
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 1.2e-76 290.4 221 66.5
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 2.0e-76 289.7 230 64.8
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 7.7e-76 287.7 228 64.5
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 7.7e-76 287.7 231 64.1
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.3e-75 287.0 228 64.5
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 2.9e-75 285.8 231 63.2
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 5.0e-75 285.0 228 68.0
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 5.0e-75 285.0 229 67.2
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 1.1e-74 283.9 228 63.2
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 1.1e-74 283.9 231 63.6
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 2.5e-74 282.7 228 63.2
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 2.5e-74 282.7 224 66.5
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 4.2e-74 282.0 224 66.5
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 9.4e-74 280.8 228 64.5
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 1.2e-73 280.4 229 65.1
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 2.1e-73 279.6 221 68.8
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 2.7e-73 279.3 229 62.0
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 3.6e-73 278.9 233 62.7
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 6.1e-73 278.1 224 65.2
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 1.0e-72 277.3 229 62.9
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 1.4e-72 276.9 231 62.8
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 1.4e-72 276.9 232 63.8
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 1.8e-72 276.6 230 61.7
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 3.0e-72 275.8 224 64.7
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 6.7e-72 274.6 228 63.2
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 8.8e-72 274.2 231 64.1
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 1.1e-71 273.9 224 64.3
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 4.3e-71 271.9 229 63.3
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 7.4e-71 271.2 228 62.3
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 7.4e-71 271.2 228 62.3
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 7.4e-71 271.2 228 62.3
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 9.7e-71 270.8 228 62.3
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 8.2e-70 267.7 221 66.1
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 2.4e-69 266.2 229 61.6
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 6.9e-69 264.6 228 61.0
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 9.1e-69 264.2 235 61.3
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.3e-67 260.4 228 59.2
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 6.5e-67 258.1 228 58.3
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 1.9e-66 256.5 216 61.6
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 1.2e-65 253.8 241 58.5
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.2e-65 253.8 281 53.0
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 3.6e-65 252.3 212 61.8
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 6.1e-65 251.5 228 58.8
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 6.1e-65 251.5 227 59.9
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 7.9e-65 251.1 230 58.3
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 1.0e-64 250.8 224 60.3
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 2.3e-64 249.6 237 56.5
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.6e-63 246.1 228 55.7
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 1.1e-61 240.7 252 54.0
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 5.3e-61 238.4 224 57.6
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 2.6e-60 236.1 228 53.1
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 1.0e-59 234.2 233 55.4
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.1e-58 230.7 209 56.9
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 1.9e-58 229.9 231 53.2
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 9.4e-58 227.6 254 52.0
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.2e-57 227.3 221 56.1
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 4.4e-55 218.8 229 51.1
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 2.8e-54 216.1 165 67.9
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 4.8e-54 215.3 233 48.9
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 4.8e-54 215.3 229 56.3
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 5.3e-53 211.8 231 48.9
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.2e-52 210.7 225 51.1
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 5.9e-52 208.4 230 47.0
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 1.7e-51 206.8 228 49.1
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 3.2e-50 202.6 221 52.5
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.6e-49 200.3 189 57.7
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 1.0e-48 197.6 216 50.0
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 4.0e-48 195.7 218 45.0
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.2e-47 194.1 165 63.0
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.4e-45 187.2 164 64.0
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 1.2e-41 174.1 162 56.2
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 2.3e-32 143.3 106 66.0
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.2e-31 141.0 191 47.6
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 2.6e-31 139.8 101 71.3
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 9.8e-31 137.9 261 34.1
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 1.4e-29 134.0 100 64.0
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 3.2e-29 132.9 221 36.2
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 5.4e-29 132.1 119 58.8
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 4.6e-28 129.0 142 52.1
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 5.0e-27 125.6 115 59.1
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 1.8e-24 117.1 274 29.9
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 3.2e-21 106.3 164 43.9
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.2e-21 106.3 164 43.9
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 7.0e-21 105.1 83 59.0
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 2.7e-20 103.2 83 57.8
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 2.7e-20 103.2 82 57.3
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 4.6e-20 102.4 196 35.7
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.3e-19 100.9 74 70.3
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 5.0e-19 99.0 83 55.4
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 4.3e-18 95.9 63 71.4
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.5e-15 87.4 71 62.0
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 5.8e-15 85.5 77 50.6
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 2.2e-14 83.6 89 62.9
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 7.8e-12 75.1 75 57.3
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 1.3e-11 74.3 54 68.5


User provided reference genes

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