Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 4.1e-189 664.5 313 100.0
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 1.8e-184 649.0 313 96.5
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 1.9e-181 639.0 309 95.8
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 1.9e-181 639.0 309 96.1
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 5.4e-181 637.5 313 95.5
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 1.2e-175 619.8 309 91.9
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 7.6e-175 617.1 313 91.1
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 4.9e-174 614.4 313 90.4
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 5.4e-173 610.9 307 90.2
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 5.4e-173 610.9 313 90.1
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 2.1e-172 609.0 313 89.8
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 4.6e-172 607.8 313 89.8
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 7.8e-172 607.1 312 89.4
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 1.7e-171 605.9 307 90.2
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 3.9e-171 604.7 307 89.9
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.1e-170 603.2 311 88.7
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.1e-170 603.2 307 89.3
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 2.5e-170 602.1 313 87.9
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.5e-170 602.1 307 90.2
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 1.6e-169 599.4 307 88.6
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 2.4e-168 595.5 311 88.4
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 4.4e-167 591.3 305 88.2
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 7.6e-167 590.5 305 86.9
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 1.3e-166 589.7 307 89.3
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 8.4e-166 587.0 312 85.9
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 1.1e-165 586.6 313 86.3
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 1.1e-165 586.6 310 85.8
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 1.9e-165 585.9 313 86.3
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 5.4e-165 584.3 307 86.3
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 2.1e-164 582.4 307 86.3
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 1.0e-163 580.1 304 84.2
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 1.0e-163 580.1 309 85.8
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 1.0e-163 580.1 317 82.3
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 1.0e-163 580.1 305 86.9
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 2.3e-163 578.9 307 86.3
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 3.9e-163 578.2 308 86.0
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 5.1e-163 577.8 308 85.7
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 6.6e-163 577.4 315 82.9
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 6.6e-163 577.4 305 85.6
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.1e-162 576.6 313 86.3
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 1.5e-162 576.2 316 82.3
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 3.3e-162 575.1 315 82.5
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 3.3e-162 575.1 306 86.9
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 5.6e-162 574.3 305 86.6
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 1.6e-161 572.8 304 83.6
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 2.8e-161 572.0 305 86.9
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 2.8e-161 572.0 310 84.8
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 6.2e-161 570.9 309 85.1
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 1.2e-159 566.6 310 84.8
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 1.7e-158 562.8 306 83.3
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 3.8e-158 561.6 320 80.9
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 6.4e-158 560.8 320 80.9
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 1.4e-157 559.7 320 80.6
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 4.2e-157 558.1 320 80.3
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 4.2e-157 558.1 320 80.3
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 7.1e-157 557.4 315 80.6
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 9.3e-157 557.0 313 84.0
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 2.1e-156 555.8 306 82.0
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 7.9e-156 553.9 301 85.7
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 3.0e-155 552.0 305 82.6
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 3.3e-154 548.5 305 83.0
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 2.4e-152 542.3 295 86.4
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 2.4e-152 542.3 307 83.1
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 3.1e-152 542.0 307 81.4
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 4.0e-152 541.6 415 65.5
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 2.0e-151 539.3 313 80.5
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 2.2e-150 535.8 364 71.2
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 5.1e-147 524.6 305 78.4
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 3.3e-146 521.9 303 81.2
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 4.3e-146 521.5 293 85.3
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 4.8e-145 518.1 271 87.1
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 6.2e-145 517.7 267 88.8
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 6.9e-144 514.2 263 89.7
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 3.2e-133 478.8 312 75.0
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 5.1e-131 471.5 326 68.7
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 1.1e-130 470.3 303 73.3
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 1.5e-130 469.9 262 82.1
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 2.9e-126 455.7 310 70.6
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 2.1e-124 449.5 255 80.4
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 6.7e-123 444.5 302 64.2
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 6.7e-115 417.9 340 62.9
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 8.8e-99 364.4 303 62.7
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 7.5e-98 361.3 179 91.6
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 1.3e-97 360.5 269 65.4
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 9.5e-93 344.4 170 90.0
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.1e-92 343.2 186 86.6
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 3.6e-92 342.4 170 92.9
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 2.0e-90 336.7 164 93.3
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 4.4e-90 335.5 179 83.2
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 9.8e-90 334.3 164 92.1
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 8.3e-89 331.3 170 88.8
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 5.4e-88 328.6 164 89.6
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 9.2e-88 327.8 164 91.5
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.6e-87 327.0 166 87.3
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 2.0e-87 326.6 163 90.8
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 5.9e-87 325.1 160 91.9
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 1.3e-86 323.9 163 90.8
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 8.6e-86 321.2 170 87.1
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 8.6e-86 321.2 160 90.6
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.5e-85 320.5 164 87.2
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 1.1e-80 304.3 248 56.0
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 1.9e-80 303.5 181 79.6
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 7.5e-74 281.6 146 90.4
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 2.3e-62 243.4 124 88.7
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 2.3e-62 243.4 124 88.7
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.1e-61 241.1 124 88.7
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 2.5e-61 240.0 124 87.1
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 3.6e-60 236.1 124 88.7
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 5.2e-59 232.3 124 84.7
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 8.9e-59 231.5 122 84.4
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 4.4e-58 229.2 124 83.9
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 1.7e-57 227.3 124 83.9
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 3.8e-57 226.1 124 83.1
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 1.1e-56 224.6 124 82.3
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 1.9e-56 223.8 124 82.3
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.2e-55 221.1 124 80.6
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 2.3e-54 216.9 111 89.2
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 8.7e-54 214.9 144 74.3
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 7.3e-53 211.8 117 80.3
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 9.6e-53 211.5 125 80.0
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 1.1e-51 208.0 123 75.6
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 4.9e-49 199.1 101 84.2
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 9.0e-35 151.8 89 73.0
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 3.4e-34 149.8 243 37.4
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 6.4e-33 145.6 69 95.7
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 7.9e-31 138.7 77 79.2
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 1.6e-28 131.0 80 73.8
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 1.1e-27 128.3 66 89.4
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 3.0e-22 110.2 71 76.1
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 6.9e-19 99.0 66 71.2
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 5.5e-16 89.4 46 87.0
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 1.0e-14 85.1 47 83.0
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 6.3e-12 75.9 40 85.0
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 2.0e-10 70.9 34 88.2
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 3.2e-08 63.5 56 57.1


User provided reference genes

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