Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.4e-204 716.1 360 100.0
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 1.3e-162 576.6 358 83.0
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.4e-158 560.8 356 81.5
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.1e-156 557.0 360 80.0
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 3.4e-155 552.0 360 80.0
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 6.7e-151 537.7 360 78.1
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 5.5e-129 464.9 315 74.6
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.0e-126 456.4 356 66.3
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 2.6e-126 456.1 325 72.9
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 4.4e-126 455.3 326 72.4
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.7e-125 453.4 325 69.8
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 6.3e-125 451.4 315 72.1
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 5.0e-122 441.8 346 69.1
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.1e-121 440.7 325 68.9
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.9e-121 439.9 347 64.3
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 1.6e-120 436.8 361 64.3
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.1e-120 436.4 339 67.0
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 4.7e-120 435.3 341 68.0
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 2.6e-118 429.5 317 68.1
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 4.4e-118 428.7 358 64.2
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 5.7e-118 428.3 316 69.0
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.3e-117 427.2 322 66.1
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 2.2e-117 426.4 322 66.5
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.8e-117 426.0 358 62.3
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 3.7e-117 425.6 282 73.4
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 3.1e-116 422.5 302 70.2
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 7.0e-116 421.4 306 69.6
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 5.9e-115 418.3 358 63.1
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 2.9e-114 416.0 333 65.2
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 6.6e-114 414.8 355 61.4
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.5e-113 412.9 319 67.4
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 9.5e-113 411.0 325 66.5
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 2.1e-112 409.8 353 63.2
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.0e-111 407.5 358 60.9
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 1.4e-111 407.1 358 59.8
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.8e-111 406.8 338 66.3
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 8.9e-111 404.4 308 64.9
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 2.0e-110 403.3 300 69.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.0e-110 403.3 276 71.4
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.0e-110 403.3 317 65.9
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.4e-110 402.1 333 62.2
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 4.4e-110 402.1 297 68.7
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 9.8e-110 401.0 346 60.7
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.3e-109 400.6 285 68.4
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.3e-109 400.6 283 68.6
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.7e-109 400.2 307 67.8
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.2e-109 399.8 361 62.0
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 2.9e-109 399.4 290 66.9
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 2.9e-109 399.4 350 60.3
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 4.9e-109 398.7 313 64.2
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 6.3e-109 398.3 361 62.0
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.1e-108 397.5 333 61.6
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.4e-108 397.1 356 60.7
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.8e-108 396.7 344 61.3
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 3.2e-108 396.0 354 61.0
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 4.1e-108 395.6 283 67.8
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 4.1e-108 395.6 278 70.5
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 7.0e-108 394.8 311 65.0
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.0e-108 394.8 297 66.0
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 9.2e-108 394.4 420 54.3
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.7e-107 392.9 290 66.2
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 3.5e-107 392.5 317 66.6
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 4.6e-107 392.1 286 64.3
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 4.6e-107 392.1 267 73.8
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.7e-106 390.2 271 70.5
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.9e-106 389.4 281 68.0
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 6.6e-106 388.3 309 62.8
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.1e-105 387.5 362 60.2
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.5e-105 387.1 322 62.4
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 1.9e-105 386.7 305 65.2
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 3.3e-105 386.0 262 71.8
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 4.3e-105 385.6 273 67.4
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 7.3e-105 384.8 306 62.4
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 7.3e-105 384.8 302 66.9
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 3.6e-104 382.5 269 68.0
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 6.1e-104 381.7 357 56.6
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.1e-104 381.7 284 68.0
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.4e-103 380.6 266 71.1
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.4e-103 380.6 262 69.5
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.8e-103 380.2 355 55.5
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 8.9e-103 377.9 363 55.1
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.6e-102 376.3 360 55.0
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.6e-102 376.3 360 55.0
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 3.4e-102 375.9 280 66.4
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 5.8e-102 375.2 360 54.4
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 5.8e-102 375.2 274 69.7
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 7.5e-102 374.8 355 54.9
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 2.2e-101 373.2 279 63.4
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 3.7e-101 372.5 213 83.6
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 6.4e-101 371.7 355 55.2
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 6.4e-101 371.7 280 66.1
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 3.2e-100 369.4 355 54.4
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 4.1e-100 369.0 252 73.4
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.6e-99 367.1 274 68.6
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 2.0e-99 366.7 291 61.2
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 2.0e-99 366.7 244 70.9
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 3.5e-99 365.9 237 73.0
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 3.5e-99 365.9 297 59.9
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.1e-97 360.9 307 60.6
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.2e-96 357.5 312 58.0
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 2.1e-96 356.7 451 47.7
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 3.6e-96 355.9 343 55.4
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 5.2e-95 352.1 239 69.0
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 3.2e-92 342.8 288 60.1
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.0e-90 337.8 213 76.5
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 6.2e-88 328.6 307 58.3
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.1e-87 327.8 356 55.1
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.2e-80 304.3 308 55.8
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 4.0e-79 299.3 345 47.5
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 8.9e-79 298.1 188 72.9
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 3.2e-76 289.7 246 59.3
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 4.4e-70 269.2 233 56.2
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 6.0e-67 258.8 210 58.1
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 6.6e-66 255.4 235 54.9
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 6.4e-61 238.8 229 50.2
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.2e-59 234.6 232 56.9
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 7.4e-57 225.3 124 87.1
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.0e-55 219.5 270 48.1
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.0e-53 214.9 212 51.4
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 7.6e-46 188.7 122 73.8
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 3.1e-39 166.8 187 46.5
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.7e-26 122.5 83 69.9
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 8.5e-21 105.5 68 75.0
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 2.1e-19 100.9 68 70.6
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.4e-18 98.2 61 75.4
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.4e-18 98.2 61 75.4
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 2.2e-16 90.9 152 34.9
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 3.7e-16 90.1 163 34.4
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 9.1e-15 85.5 78 57.7
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 3.8e-13 80.1 263 27.8
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.1e-12 78.6 189 30.2
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.5e-12 78.2 244 29.5
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.9e-12 77.8 191 29.8
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.9e-12 77.8 194 29.4
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.2e-12 76.6 190 31.1
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 5.5e-12 76.3 189 31.2
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 5.5e-12 76.3 116 36.2
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 7.2e-12 75.9 186 31.2
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 7.2e-12 75.9 186 31.2
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 7.2e-12 75.9 191 30.4
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 7.2e-12 75.9 131 33.6
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.4e-12 75.5 191 29.8
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 9.4e-12 75.5 189 29.6
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 9.4e-12 75.5 131 34.4
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 1.2e-11 75.1 190 31.6
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.2e-11 75.1 189 30.7
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.2e-11 75.1 186 30.1
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 1.6e-11 74.7 116 37.1
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 2.1e-11 74.3 131 33.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.7e-11 73.9 131 33.6
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 3.6e-11 73.6 190 29.5
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 3.6e-11 73.6 196 30.6
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 3.6e-11 73.6 146 32.9
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 4.7e-11 73.2 116 35.3
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 4.7e-11 73.2 216 30.1
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 6.1e-11 72.8 59 55.9
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 6.1e-11 72.8 190 30.5
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 6.1e-11 72.8 186 30.6
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 8.0e-11 72.4 186 29.6
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.8e-10 71.2 142 33.8
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.8e-10 71.2 191 26.7
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.8e-10 71.2 131 32.1
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 2.3e-10 70.9 191 29.8
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 3.0e-10 70.5 126 31.7
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 3.0e-10 70.5 191 28.8
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 8.8e-10 68.9 123 33.3
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 8.8e-10 68.9 120 35.0
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 4.4e-09 66.6 192 28.6
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.5e-09 65.9 274 25.5
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 9.8e-09 65.5 197 25.9
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 9.8e-09 65.5 107 33.6
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.7e-08 64.7 90 36.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 3.7e-08 63.5 191 28.3
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 6.3e-08 62.8 126 33.3
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 8.3e-08 62.4 191 27.2
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 4.1e-07 60.1 210 26.7
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 4.1e-07 60.1 177 28.8
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.0e-07 59.3 235 24.3
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 3.5e-06 57.0 198 26.3
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 4.5e-06 56.6 53 47.2
AUR62041676 Chenopodium quinoa HOM05D003844 ORTHO05D004534 7.7e-06 55.8 176 27.8


User provided reference genes

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