Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 2.1e-35 151.8 73 100.0
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.0e-26 121.3 74 81.1
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.7e-24 115.5 73 78.1
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.0e-22 108.6 73 71.2
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 3.5e-22 107.8 66 80.3
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 5.9e-22 107.1 73 72.6
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.0e-21 106.3 73 72.6
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 2.3e-21 105.1 73 74.0
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.8e-21 104.4 73 69.9
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 5.0e-21 104.0 73 71.2
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 6.6e-21 103.6 68 73.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.5e-20 102.4 73 67.1
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 4.2e-20 100.9 86 61.6
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.2e-20 100.9 73 69.9
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 5.5e-20 100.5 73 68.5
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 7.2e-20 100.1 69 66.7
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.6e-19 99.0 73 69.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 2.8e-19 98.2 65 69.2
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 6.1e-19 97.1 64 68.8
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.4e-18 95.9 73 67.1
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.8e-18 95.5 64 65.6
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 3.0e-18 94.7 67 67.2
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 3.0e-18 94.7 67 67.2
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.0e-18 94.4 67 68.7
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 5.2e-18 94.0 64 65.6
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 5.2e-18 94.0 64 65.6
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 5.2e-18 94.0 65 67.7
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 6.8e-18 93.6 65 69.2
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 6.8e-18 93.6 65 67.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.6e-17 91.7 65 70.8
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 7.5e-17 90.1 70 62.9
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 7.5e-17 90.1 72 62.5
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.3e-16 89.4 86 57.0
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-16 89.0 86 53.5
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-16 89.0 86 53.5
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.8e-16 88.2 74 66.2
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 2.8e-16 88.2 74 66.2
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.8e-16 88.2 74 66.2
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.8e-16 88.2 74 66.2
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 2.8e-16 88.2 74 66.2
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.7e-16 87.8 61 70.5
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 6.3e-16 87.0 61 65.6
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 6.3e-16 87.0 66 65.2
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 6.3e-16 87.0 66 66.7
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 8.3e-16 86.7 62 67.7
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.1e-15 86.3 67 64.2
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.4e-15 85.9 67 61.2
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.8e-15 85.5 69 63.8
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.4e-15 85.1 73 63.0
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.4e-15 85.1 68 60.3
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 7.0e-15 83.6 74 63.5
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 7.0e-15 83.6 65 63.1
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.2e-14 82.8 65 63.1
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.2e-14 82.8 62 62.9
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.6e-14 82.4 64 62.5
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.6e-14 82.4 65 58.5
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.6e-14 82.4 65 58.5
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 2.7e-14 81.6 74 62.2
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-14 81.6 74 62.2
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 2.7e-14 81.6 74 62.2
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.7e-14 81.6 61 65.6
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 5.9e-14 80.5 74 62.2
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.9e-14 80.5 67 58.2
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 5.9e-14 80.5 74 62.2
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 7.8e-14 80.1 63 63.5
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 7.8e-14 80.1 74 60.8
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 7.8e-14 80.1 74 60.8
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 7.8e-14 80.1 74 60.8
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 7.8e-14 80.1 66 59.1
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-13 79.7 74 60.8
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 1.0e-13 79.7 74 60.8
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.0e-13 79.7 74 60.8
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-13 78.6 74 59.5
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.3e-13 78.6 74 59.5
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 2.3e-13 78.6 74 60.8
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.3e-13 78.6 60 61.7
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.9e-13 78.2 74 59.5
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 3.9e-13 77.8 74 59.5
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 3.9e-13 77.8 61 62.3
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 3.9e-13 77.8 61 62.3
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 3.9e-13 77.8 67 58.2
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.6e-13 76.6 61 63.9
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.1e-12 76.3 65 60.0
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.1e-12 76.3 67 58.2
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.5e-12 75.9 69 55.1
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.9e-12 75.5 60 65.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.5e-12 75.1 62 59.7
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 3.3e-12 74.7 60 63.3
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 4.3e-12 74.3 74 56.8
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 4.3e-12 74.3 66 57.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 4.3e-12 74.3 60 66.7
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 5.6e-12 73.9 60 66.7
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 9.5e-12 73.2 63 58.7
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.2e-11 72.8 65 55.4
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.2e-11 72.8 60 65.0
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.2e-11 72.8 67 53.7
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.6e-11 72.4 60 60.0
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.6e-11 72.4 60 60.0
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.1e-11 72.0 49 69.4
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.8e-11 71.6 60 60.0
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.8e-11 71.6 72 51.4
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 3.6e-11 71.2 49 71.4
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 6.1e-11 70.5 62 56.5
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 6.1e-11 70.5 64 56.2
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 6.1e-11 70.5 64 56.2
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 6.1e-11 70.5 64 56.2
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 8.0e-11 70.1 61 59.0
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 8.0e-11 70.1 67 53.7
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-10 69.7 72 50.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-10 69.7 72 50.0
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.0e-10 69.7 64 54.7
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.0e-10 69.7 72 47.2
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-10 68.6 60 56.7
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 2.3e-10 68.6 60 56.7
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 2.3e-10 68.6 60 56.7
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 2.3e-10 68.6 60 56.7
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 2.3e-10 68.6 60 55.0
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 2.3e-10 68.6 65 52.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 2.3e-10 68.6 65 55.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 3.1e-10 68.2 60 58.3
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 3.1e-10 68.2 72 52.8
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.1e-10 68.2 59 57.6
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 3.1e-10 68.2 59 57.6
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 3.1e-10 68.2 60 60.0
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 3.1e-10 68.2 61 54.1
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 3.1e-10 68.2 64 53.1
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 5.2e-10 67.4 72 50.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 5.2e-10 67.4 60 55.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 6.8e-10 67.0 60 55.0
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 6.8e-10 67.0 60 55.0
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 8.9e-10 66.6 60 56.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 8.9e-10 66.6 68 50.0
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.9e-10 66.6 61 57.4
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.2e-09 66.2 60 58.3
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.2e-09 66.2 59 55.9
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.2e-09 66.2 60 53.3
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.2e-09 66.2 60 56.7
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.5e-09 65.9 59 54.2
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.5e-09 65.9 61 57.4
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.5e-09 65.9 59 55.9
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 55.0
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 55.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 55.0
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 56.7
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 56.7
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 56.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 56.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 56.7
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 2.0e-09 65.5 72 50.0
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 55.0
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.0e-09 65.5 62 51.6
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.6e-09 65.1 60 55.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.6e-09 65.1 66 53.0
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 3.4e-09 64.7 60 56.7
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 3.4e-09 64.7 60 56.7
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.4e-09 64.7 61 55.7
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 3.4e-09 64.7 60 53.3
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 4.4e-09 64.3 60 55.0
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 7.5e-09 63.5 60 56.7
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 7.5e-09 63.5 61 54.1
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 7.5e-09 63.5 60 56.7
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 9.8e-09 63.2 60 48.3
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.3e-08 62.8 66 53.0
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.2e-08 62.0 55 56.4
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 6.4e-08 60.5 60 48.3
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 6.4e-08 60.5 60 50.0
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 8.3e-08 60.1 60 50.0
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 8.3e-08 60.1 64 50.0
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 8.3e-08 60.1 60 50.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.1e-07 59.7 60 51.7
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.4e-07 58.5 60 46.7
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 3.2e-07 58.2 65 49.2
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 4.1e-07 57.8 60 48.3
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 9.2e-07 56.6 59 50.8
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 9.2e-07 56.6 51 54.9
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 1.2e-06 56.2 60 46.7
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.6e-06 55.8 46 56.5
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 3.5e-06 54.7 57 50.9
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 7.8e-06 53.5 54 53.7


User provided reference genes

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