Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.0e-84 317.0 198 100.0
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 9.3e-70 267.3 164 87.8
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 8.7e-68 260.8 164 85.4
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.3e-67 258.8 164 86.0
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.3e-67 258.8 164 86.0
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.3e-66 256.9 197 72.1
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.6e-66 256.5 197 72.1
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.6e-66 256.5 197 72.1
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 2.0e-64 249.6 164 78.7
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 1.2e-61 240.4 164 79.3
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 5.1e-60 235.0 164 76.2
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 5.1e-60 235.0 161 75.2
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 3.7e-58 228.8 164 76.2
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 8.2e-58 227.6 164 76.2
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.9e-54 216.5 164 74.4
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.5e-54 216.1 163 75.5
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 5.5e-54 214.9 165 75.8
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 5.5e-54 214.9 164 73.2
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 9.3e-54 214.2 164 68.3
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 6.1e-53 211.5 164 71.3
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 1.8e-52 209.9 164 69.5
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 3.0e-52 209.1 164 68.9
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 1.5e-51 206.8 164 69.5
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.5e-51 206.8 165 67.9
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 2.5e-51 206.1 165 68.5
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.5e-51 206.1 164 65.9
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 9.7e-51 204.1 163 71.2
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.3e-50 203.8 147 73.5
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 1.3e-50 203.8 164 69.5
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 2.2e-50 203.0 162 71.0
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.8e-50 202.6 165 68.5
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 3.7e-50 202.2 165 70.9
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 6.3e-50 201.4 165 70.9
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.4e-49 200.3 176 64.8
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.8e-49 199.9 164 65.9
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 4.1e-49 198.7 176 63.6
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 6.9e-49 198.0 161 69.6
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 9.0e-49 197.6 164 65.9
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.2e-48 197.2 167 68.3
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 4.5e-48 195.3 167 68.9
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 5.9e-48 194.9 165 69.1
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.0e-47 194.1 164 67.1
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.0e-47 194.1 164 65.9
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.7e-47 193.4 128 82.0
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.7e-47 193.4 164 65.9
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 5.0e-47 191.8 164 67.1
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 5.0e-47 191.8 165 66.7
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 5.0e-47 191.8 167 68.3
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 5.0e-47 191.8 164 66.5
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 2.5e-46 189.5 164 67.1
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 3.2e-46 189.1 164 66.5
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 3.2e-46 189.1 164 65.9
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 3.2e-46 189.1 164 67.1
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.2e-46 189.1 164 65.9
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.2e-46 189.1 198 57.6
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.2e-46 188.7 198 57.6
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 9.4e-46 187.6 127 77.2
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 1.2e-45 187.2 198 57.1
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.2e-45 187.2 165 66.1
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.6e-45 186.8 163 65.6
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.6e-45 186.8 140 74.3
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.6e-45 186.8 167 64.7
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.1e-45 186.4 164 66.5
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 3.6e-45 185.7 198 57.1
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 4.6e-45 185.3 164 64.0
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 6.1e-45 184.9 166 65.1
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 7.9e-45 184.5 168 66.1
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 7.9e-45 184.5 165 64.8
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 1.0e-44 184.1 139 70.5
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.4e-44 183.7 164 66.5
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.4e-44 183.7 149 69.8
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 1.8e-44 183.3 107 87.9
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.0e-44 182.6 149 68.5
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 3.9e-44 182.2 164 64.0
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.9e-44 182.2 165 65.5
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.9e-44 182.2 167 64.7
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 8.8e-44 181.0 141 69.5
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.1e-43 180.6 164 64.6
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 1.5e-43 180.3 127 75.6
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.0e-43 179.9 165 64.8
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 2.5e-43 179.5 164 64.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 3.3e-43 179.1 127 77.2
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 5.7e-43 178.3 164 64.0
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 7.4e-43 177.9 169 61.5
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.3e-42 177.2 164 62.2
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.8e-42 176.0 146 69.2
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 3.7e-42 175.6 169 60.9
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 3.7e-42 175.6 170 61.2
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.4e-41 173.7 113 81.4
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.4e-41 173.7 165 64.8
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 1.8e-41 173.3 164 61.0
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 2.4e-41 172.9 123 74.0
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.4e-41 172.9 167 62.9
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 3.1e-41 172.6 170 61.8
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 3.1e-41 172.6 165 63.6
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 4.1e-41 172.2 160 64.4
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 5.3e-41 171.8 145 70.3
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.5e-40 170.2 164 59.8
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 2.6e-40 169.5 165 61.8
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 4.5e-40 168.7 147 63.9
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 5.9e-40 168.3 147 63.9
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 5.9e-40 168.3 148 66.2
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 7.7e-40 167.9 147 61.9
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.3e-39 167.2 149 63.8
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.3e-39 167.2 149 64.4
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.7e-39 166.8 115 75.7
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.7e-39 166.8 148 64.9
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 1.7e-39 166.8 107 81.3
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.2e-39 166.4 157 61.8
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.5e-39 164.9 161 60.2
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 6.5e-39 164.9 164 59.1
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-38 164.1 148 65.5
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 1.1e-38 164.1 154 62.3
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.4e-38 163.7 133 67.7
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.4e-38 163.7 161 59.6
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.9e-38 163.3 147 63.9
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 2.5e-38 162.9 148 66.9
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 5.5e-38 161.8 166 58.4
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 5.5e-38 161.8 153 59.5
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.1e-37 159.8 159 58.5
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.1e-37 159.8 108 79.6
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 2.7e-37 159.5 165 60.6
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 6.1e-37 158.3 154 59.1
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 3.0e-36 156.0 108 76.9
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 3.0e-36 156.0 109 76.1
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 3.0e-36 156.0 109 76.1
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 3.0e-36 156.0 109 76.1
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 3.0e-36 156.0 109 76.1
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 6.7e-36 154.8 166 60.2
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.5e-35 153.7 166 59.0
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.0e-35 153.3 163 58.9
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 2.6e-35 152.9 157 60.5
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 7.4e-35 151.4 114 72.8
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 6.3e-34 148.3 142 64.8
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.4e-33 147.1 166 54.2
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 4.1e-33 145.6 132 61.4
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 5.3e-33 145.2 110 66.4
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 7.0e-33 144.8 83 90.4
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.0e-32 143.3 186 50.0
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.0e-32 143.3 110 70.0
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 3.5e-32 142.5 82 91.5
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 3.5e-32 142.5 82 91.5
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 3.5e-32 142.5 82 90.2
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 5.9e-32 141.7 119 63.0
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 7.7e-32 141.4 80 90.0
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 5.0e-31 138.7 104 74.0
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 5.0e-31 138.7 151 57.6
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.5e-31 138.3 80 87.5
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.5e-30 136.3 110 67.3
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 9.4e-30 134.4 84 81.0
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.6e-29 133.7 81 81.5
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 3.6e-29 132.5 103 73.8
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 5.2e-28 128.6 127 59.8
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 8.8e-28 127.9 111 61.3
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 2.4e-25 119.8 83 71.1
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 3.1e-25 119.4 81 70.4
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 1.2e-24 117.5 135 58.5
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.7e-18 97.1 79 68.4
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 3.7e-18 95.9 79 67.1
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 6.3e-18 95.1 78 66.7
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 6.3e-18 95.1 84 59.5
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 4.1e-17 92.4 79 67.1
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 2.7e-16 89.7 79 65.8
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 2.7e-16 89.7 79 65.8
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 3.5e-16 89.4 78 56.4
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 1.3e-15 87.4 112 46.4
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 7.2e-14 81.6 44 95.5
Lalb_Chr12g0198741 Lupinus albus HOM05D004106 ORTHO05D004381 1.4e-09 67.4 82 46.3
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 7.3e-06 55.1 125 36.8


User provided reference genes

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