Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 9.4e-232 806.6 435 100.0
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 4.5e-141 505.4 421 69.4
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 2.0e-104 383.6 411 57.4
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 1.6e-77 294.3 381 50.1
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 1.0e-76 291.6 381 49.9
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 1.7e-76 290.8 381 49.6
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 1.3e-71 274.6 433 45.3
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 4.6e-69 266.2 394 48.0
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 5.6e-59 232.6 450 42.0
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 9.5e-59 231.9 502 38.2
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 5.8e-56 222.6 385 43.1
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 1.3e-52 211.5 568 34.9
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 2.3e-52 210.7 402 41.8
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 5.2e-49 199.5 439 39.6
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 6.8e-49 199.1 408 40.4
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 5.4e-46 189.5 428 38.3
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 1.6e-45 188.0 427 39.8
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 3.5e-45 186.8 452 36.9
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 8.6e-44 182.2 422 37.4
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 2.1e-42 177.6 371 38.8
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 5.8e-40 169.5 392 37.5
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 1.1e-38 165.2 438 33.1
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 1.9e-38 164.5 279 42.7
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 4.6e-37 159.8 333 39.0
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 1.0e-36 158.7 427 33.7
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.0e-36 158.7 323 40.9
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 1.1e-35 155.2 430 35.1
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 1.5e-35 154.8 438 36.8
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 9.6e-35 152.1 486 33.3
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 1.3e-34 151.8 412 32.8
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 3.6e-34 150.2 449 33.0
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 8.1e-34 149.1 439 33.7
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 4.0e-33 146.7 358 38.3
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 2.0e-32 144.4 405 32.1
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 2.6e-32 144.1 363 37.2
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 5.8e-32 142.9 411 35.5
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 7.6e-32 142.5 349 37.0
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 1.3e-31 141.7 401 33.2
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 1.3e-31 141.7 401 33.2
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 1.1e-30 138.7 420 34.0
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 3.2e-30 137.1 423 32.9
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 1.6e-29 134.8 407 34.9
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.7e-29 134.0 452 32.7
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 7.9e-29 132.5 415 33.0
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 1.7e-28 131.3 448 32.8
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 5.1e-28 129.8 437 32.5
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 6.6e-28 129.4 368 34.5
FAN23G3106 Fragaria x ananassa HOM05D003426 ORTHO05D003816 1.5e-27 128.3 431 33.4
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 1.5e-27 128.3 337 35.6
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.5e-27 128.3 416 33.4
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 4.3e-27 126.7 435 30.8
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 5.6e-27 126.3 395 31.4
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 5.6e-27 126.3 437 31.1
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 7.3e-27 125.9 412 34.5
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 9.6e-27 125.6 227 41.4
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 9.6e-27 125.6 390 34.4
RcHm_v2.0_Chr2g0085511 Rosa chinensis HOM05D003426 ORTHO05D003816 1.4e-25 121.7 443 32.7
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 2.4e-25 120.9 345 32.5
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 4.0e-25 120.2 329 36.2
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 2.6e-24 117.5 208 40.9
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 5.8e-24 116.3 348 32.5
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 7.6e-24 115.9 419 33.4
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 2.2e-23 114.4 421 30.4
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 2.2e-23 114.4 252 38.1
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 6.4e-23 112.8 349 34.4
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 6.4e-23 112.8 430 30.2
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 2.4e-22 110.9 433 29.8
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 3.2e-22 110.5 442 29.2
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 1.2e-21 108.6 397 29.2
QL02p093534 Quercus lobata HOM05D003426 ORTHO05D003816 2.1e-21 107.8 184 43.5
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 3.5e-21 107.1 388 31.7
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 7.9e-21 105.9 411 29.2
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 7.9e-21 105.9 403 30.8
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.0e-20 105.5 396 33.1
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 1.0e-20 105.5 367 33.2
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 3.9e-20 103.6 373 28.7
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 6.7e-20 102.8 286 36.7
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 1.1e-19 102.1 446 27.4
MELO3C010212.2 Cucumis melo HOM05D003426 ORTHO05D003816 1.5e-19 101.7 389 27.2
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 1.9e-19 101.3 362 30.1
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 5.6e-19 99.8 374 28.1
QL02p093555 Quercus lobata HOM05D003426 ORTHO05D003816 7.4e-19 99.4 186 41.4
ClCG02G014420 Citrullus lanatus HOM05D003426 ORTHO05D003816 1.1e-17 95.5 423 27.9
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 1.1e-17 95.5 440 28.0
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 1.8e-17 94.7 411 26.0
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 1.8e-17 94.7 364 30.8
ClCG06G012490 Citrullus lanatus HOM05D003426 ORTHO05D003816 4.0e-17 93.6 383 27.4
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 5.3e-17 93.2 360 30.6
Glyma.17G072650 Glycine max HOM05D003426 ORTHO05D003816 6.9e-17 92.8 277 34.7
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 6.9e-17 92.8 415 28.9
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 9.0e-17 92.4 388 29.4
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 4.5e-16 90.1 343 29.7
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 5.8e-16 89.7 366 29.8
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 1.0e-15 89.0 264 31.4
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 2.2e-15 87.8 497 26.2
Medtr4g129690 Medicago truncatula HOM05D003426 ORTHO05D003816 1.1e-14 85.5 429 26.1
SGA_v2.0_scaffold265G46098 Striga asiatica HOM05D003426 ORTHO05D003816 1.1e-14 85.5 333 30.0
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.9e-14 84.7 352 28.1
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 1.9e-14 84.7 400 29.5
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 2.5e-14 84.3 185 33.0
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 4.2e-14 83.6 230 33.0
CSS0012807 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 7.1e-14 82.8 188 36.2
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 7.1e-14 82.8 387 29.2
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 2.7e-13 80.9 427 29.0
PSO561G0041 Papaver somniferum HOM05D003426 ORTHO05D003816 3.5e-13 80.5 449 26.9
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 4.6e-13 80.1 277 30.3
Solyc10g048140.2 Solanum lycopersicum HOM05D003426 ORTHO05D003816 4.6e-13 80.1 213 32.9
CsaV3_2G007580 Cucumis sativus L. HOM05D003426 ORTHO05D003816 1.0e-12 79.0 387 26.9
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 1.0e-12 79.0 224 31.2
Sed0007563 Sechium edule HOM05D003426 ORTHO05D003816 1.3e-12 78.6 333 28.8
Psat6g228520 Pisum sativum HOM05D003426 ORTHO05D003816 2.3e-12 77.8 276 29.7
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.3e-12 77.8 259 34.7
Ciclev10032854m.g Citrus clementina HOM05D003426 ORTHO05D003816 3.0e-12 77.4 130 46.9
Sp4g02940 Schrenkiella parvula HOM05D012895 ORTHO05D014428 3.0e-12 77.4 407 28.5
PGSC0003DMG400040189 Solanum tuberosum HOM05D003426 ORTHO05D003816 5.1e-12 76.6 205 34.1
CSS0027727 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 6.7e-12 76.3 145 43.4
Phvul.010G050200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 6.7e-12 76.3 230 31.3
QL02p093542 Quercus lobata HOM05D001418 ORTHO05D002038 1.1e-11 75.5 206 34.0
MELO3C004128.2 Cucumis melo HOM05D003426 ORTHO05D003816 1.9e-11 74.7 349 29.2
Dinv17422 Davidia involucrata HOM05D003426 ORTHO05D003816 1.9e-11 74.7 215 31.6
A04p18340 Brassica napus HOM05D012895 ORTHO05D014428 2.5e-11 74.3 386 26.9
BraA04t17445Z Brassica rapa HOM05D012895 ORTHO05D014428 2.5e-11 74.3 386 26.9
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 2.5e-11 74.3 408 25.7
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.3e-11 73.9 199 33.7
PSO675G1450 Papaver somniferum HOM05D003426 ORTHO05D003816 4.3e-11 73.6 281 28.1
Sopen10g019310 Solanum pennellii HOM05D003426 ORTHO05D003816 4.3e-11 73.6 253 30.0
SGA_v2.0_scaffold1435G53950 Striga asiatica HOM05D003426 ORTHO05D003816 7.4e-11 72.8 235 32.3
Lsat_1_v5_gn_5_89740 Lactuca sativa HOM05D003426 ORTHO05D003816 9.6e-11 72.4 248 32.3
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 1.3e-10 72.0 356 26.7
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 1.6e-10 71.6 186 30.1
AL4G14080 Arabidopsis lyrata HOM05D012895 ORTHO05D014428 2.1e-10 71.2 436 25.7
Thhalv10000536m.g Eutrema salsugineum HOM05D012895 ORTHO05D014428 2.1e-10 71.2 386 26.7
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 2.8e-10 70.9 197 33.0
AT2G24030 Arabidopsis thaliana HOM05D012895 ORTHO05D014428 3.7e-10 70.5 409 25.4
PSO111G0039 Papaver somniferum HOM05D003426 ORTHO05D003816 4.8e-10 70.1 449 26.7
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 1.1e-09 68.9 197 28.9
CiPaw.16G108200 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.1e-09 68.9 248 36.7
Glyma.17G072800 Glycine max HOM05D003426 ORTHO05D003816 4.1e-09 67.0 280 30.7
Nitab4.5_0002290g0120 Nicotiana tabacum HOM05D003426 ORTHO05D003816 4.1e-09 67.0 186 33.3
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 5.3e-09 66.6 341 26.1
TPR.G24886 Trifolium pratense HOM05D003426 ORTHO05D003816 5.3e-09 66.6 455 25.5
CARHR184730 Cardamine hirsuta HOM05D012895 ORTHO05D014428 6.9e-09 66.2 382 27.7
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 6.9e-09 66.2 190 25.8
C04p53570 Brassica napus HOM05D012895 ORTHO05D014428 1.5e-08 65.1 397 27.5
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 1.5e-08 65.1 248 31.0
BcaC02g08512 Brassica carinata HOM05D012895 ORTHO05D014428 2.0e-08 64.7 399 27.8
BolC4t26912H Brassica oleracea HOM05D012895 ORTHO05D014428 2.0e-08 64.7 399 27.8
Medtr3g045840 Medicago truncatula HOM05D003426 ORTHO05D003816 2.0e-08 64.7 274 30.7
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 2.6e-08 64.3 187 27.8
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 4.5e-08 63.5 346 28.6
Nn1g05634 Nelumbo nucifera HOM05D000650 ORTHO05D000735 1.0e-07 62.4 238 27.7
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 1.3e-07 62.0 242 28.1
PSO675G7028 Papaver somniferum HOM05D003426 ORTHO05D003816 1.3e-07 62.0 196 31.6
Prupe.8G072900 Prunus persica HOM05D000650 ORTHO05D007302 1.3e-07 62.0 173 30.1
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.3e-07 62.0 345 27.8
SGA_v2.0_scaffold83G26387 Striga asiatica HOM05D000650 ORTHO05D000735 1.3e-07 62.0 176 24.4
EL10Ac2g02492 Beta vulgaris HOM05D016866 ORTHO05D003816 1.7e-07 61.6 197 32.0
Glyma.17G193101 Glycine max HOM05D003426 ORTHO05D003816 1.7e-07 61.6 187 34.2
Sc18g0002970 Simmondsia chinensis HOM05D003426 ORTHO05D003816 1.7e-07 61.6 360 27.2
BcaB06g27961 Brassica carinata HOM05D012895 ORTHO05D014428 2.9e-07 60.8 391 24.8
Dinv24138 Davidia involucrata HOM05D000650 ORTHO05D007302 2.9e-07 60.8 189 30.7
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 2.9e-07 60.8 181 27.6
ECA234G0256 Erigeron canadensis HOM05D003426 ORTHO05D003816 3.8e-07 60.5 208 29.8
Aqoxy6G00819 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 8.4e-07 59.3 179 29.6
RcHm_v2.0_Chr6g0270081 Rosa chinensis HOM05D000650 ORTHO05D007302 1.1e-06 58.9 186 28.0
Actinidia14135 Actinidia chinensis HOM05D022929 ORTHO05D003816 1.4e-06 58.5 183 29.5
Nitab4.5_0011705g0030 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.9e-06 58.2 84 48.8
Rhsim02G0230700 Rhododendron simsii HOM05D000448 ORTHO05D000291 1.9e-06 58.2 92 42.4
RcHm_v2.0_Chr6g0270121 Rosa chinensis HOM05D000650 ORTHO05D007302 1.9e-06 58.2 192 28.6
Haze_01807 Corylus avellana HOM05D000650 ORTHO05D010020 2.5e-06 57.8 56 51.8
Duzib248G1171 Durio zibethinus HOM05D000650 ORTHO05D007302 3.2e-06 57.4 205 27.3
TWI59G0327 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 3.2e-06 57.4 191 28.8
Migut.B00537 Erythranthe guttata HOM05D000650 ORTHO05D000735 4.2e-06 57.0 222 28.8
Manes.05G189300 Manihot esculenta HOM05D000650 ORTHO05D010020 4.2e-06 57.0 48 54.2
Phvul.008G183100 Phaseolus vulgaris HOM05D000650 ORTHO05D010020 5.5e-06 56.6 64 54.7
Sc11g0003460 Simmondsia chinensis HOM05D003426 ORTHO05D003816 5.5e-06 56.6 54 51.9
PGSC0003DMG400029015 Solanum tuberosum HOM05D000650 ORTHO05D007302 5.5e-06 56.6 191 27.7
Haze_02287 Corylus avellana HOM05D003426 ORTHO05D003816 7.2e-06 56.2 65 55.4
Thecc.08G073600 Theobroma cacao HOM05D000650 ORTHO05D010020 7.2e-06 56.2 57 47.4


User provided reference genes

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