Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 4.5e-204 714.5 403 100.0
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 2.8e-158 562.4 401 76.3
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 6.3e-158 561.2 401 76.1
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 4.7e-153 545.0 405 74.8
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 7.9e-108 394.8 403 58.1
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.1e-101 374.4 401 56.1
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 4.8e-97 359.0 412 51.7
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.1e-96 357.8 414 51.7
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 6.9e-96 355.1 410 51.7
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 1.3e-94 350.9 401 52.4
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 1.3e-94 350.9 407 52.6
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 8.4e-94 348.2 410 50.7
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.4e-93 347.4 398 51.0
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 1.9e-93 347.1 392 51.5
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 3.2e-93 346.3 400 51.8
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 1.6e-92 344.0 396 51.8
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 3.0e-91 339.7 404 50.7
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 5.1e-91 339.0 401 51.1
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 1.5e-90 337.4 403 51.9
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 3.4e-87 326.2 390 49.7
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 1.3e-86 324.3 404 48.0
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 5.0e-86 322.4 396 48.2
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 8.5e-86 321.6 409 49.4
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 1.4e-85 320.9 405 47.9
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 4.2e-85 319.3 400 47.0
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 7.2e-85 318.5 397 51.6
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 1.6e-84 317.4 409 44.7
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 1.3e-83 314.3 402 46.0
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 1.8e-83 313.9 406 45.6
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.8e-83 313.9 406 45.6
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.9e-83 312.8 400 46.5
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 2.5e-82 310.1 416 46.2
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 4.3e-82 309.3 404 45.5
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 7.4e-82 308.5 404 45.3
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 9.7e-82 308.1 407 47.7
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 9.7e-82 308.1 397 47.4
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 1.3e-81 307.8 406 47.5
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 1.3e-81 307.8 402 46.0
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 1.7e-81 307.4 400 46.5
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 1.7e-81 307.4 396 48.0
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 2.2e-81 307.0 398 47.7
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.8e-81 306.6 400 46.0
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 2.8e-81 306.6 409 43.8
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 1.1e-80 304.7 409 44.0
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 1.1e-80 304.7 402 46.3
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 2.4e-80 303.5 412 45.9
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.5e-79 300.8 413 46.2
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 3.4e-79 299.7 416 44.7
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 7.7e-79 298.5 414 44.9
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.0e-78 298.1 401 44.9
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 1.3e-78 297.7 404 43.8
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 1.3e-78 297.7 403 45.7
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 1.3e-78 297.7 406 45.8
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 1.7e-78 297.4 401 44.9
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.7e-78 297.4 401 44.9
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 2.9e-78 296.6 399 44.9
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.8e-78 296.2 401 45.4
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 1.1e-77 294.7 397 43.8
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 1.4e-77 294.3 407 45.0
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 3.2e-77 293.1 411 44.3
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 3.2e-77 293.1 409 43.8
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 3.2e-77 293.1 417 42.9
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 4.2e-77 292.7 404 44.3
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 5.5e-77 292.4 395 44.3
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 5.5e-77 292.4 405 44.0
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 7.2e-77 292.0 407 43.7
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.2e-76 291.2 405 43.5
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 1.2e-76 291.2 403 43.7
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 1.6e-76 290.8 410 44.9
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 2.7e-76 290.0 399 44.6
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 2.7e-76 290.0 407 44.0
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 3.6e-76 289.7 412 44.9
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 4.7e-76 289.3 397 44.6
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 6.1e-76 288.9 415 43.4
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 1.0e-75 288.1 405 45.2
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 1.8e-75 287.3 416 42.8
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 1.8e-75 287.3 415 43.4
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 3.9e-75 286.2 404 43.3
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 5.1e-75 285.8 404 43.1
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 6.7e-75 285.4 420 44.3
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 1.5e-74 284.3 397 43.8
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 2.0e-74 283.9 401 44.1
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 2.6e-74 283.5 410 42.9
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 2.6e-74 283.5 412 43.4
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 1.3e-73 281.2 403 42.7
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 2.2e-73 280.4 403 42.7
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 2.8e-73 280.0 402 44.5
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 1.1e-72 278.1 400 44.8
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 1.1e-72 278.1 402 41.8
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 1.7e-70 270.8 392 42.6
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 8.5e-70 268.5 401 42.6
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 8.5e-70 268.5 416 40.1
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 1.9e-69 267.3 318 49.1
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 4.2e-69 266.2 397 41.3
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 7.2e-69 265.4 397 43.3
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 9.4e-69 265.0 402 40.5
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 1.0e-67 261.5 413 40.2
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 1.4e-67 261.2 391 41.4
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 1.8e-67 260.8 401 42.1
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 1.5e-66 257.7 391 43.2
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 1.3e-65 254.6 412 38.6
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 1.1e-64 251.5 409 40.8
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 5.3e-64 249.2 297 47.8
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 5.3e-64 249.2 391 41.2
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 2.0e-63 247.3 358 43.0
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 5.9e-63 245.7 454 36.6
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 7.7e-63 245.4 363 46.8
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 6.5e-62 242.3 358 42.2
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 5.5e-61 239.2 396 41.2
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 1.2e-60 238.0 345 42.9
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 4.7e-60 236.1 407 38.3
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 2.3e-59 233.8 395 41.3
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 3.3e-58 229.9 294 44.6
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 5.7e-58 229.2 370 39.5
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 3.7e-57 226.5 277 51.6
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 5.3e-56 222.6 400 35.8
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 5.0e-54 216.1 325 41.2
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 1.9e-53 214.2 404 38.4
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 2.5e-53 213.8 294 41.2
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 3.6e-52 209.9 403 36.7
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 6.3e-49 199.1 401 36.4
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 1.7e-46 191.0 295 40.3
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 6.5e-46 189.1 400 32.8
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 3.7e-41 173.3 393 33.6
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 1.9e-37 161.0 358 31.3
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 1.8e-35 154.5 453 32.7
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 1.7e-33 147.9 165 49.1
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 3.5e-31 140.2 258 34.9
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.5e-31 140.2 181 48.1
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 4.3e-29 133.3 405 30.9
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 4.0e-27 126.7 187 42.2
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 4.6e-23 113.2 188 35.1
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 1.7e-22 111.3 120 49.2
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 5.6e-21 106.3 228 34.2
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 1.0e-14 85.5 170 32.9
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 8.6e-14 82.4 144 36.8
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 7.6e-10 69.3 115 37.4
CANSAT11G0844 Cannabis sativa HOM05D002008 ORTHO05D002054 7.8e-07 59.3 110 35.5
VMungo1309G2190 Vigna mungo HOM05D005830 ORTHO05D026219 1.0e-06 58.9 89 37.1


User provided reference genes

Program Settings