Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 1.7e-168 595.9 294 100.0
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 8.7e-157 557.0 294 92.9
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.8e-154 549.3 294 91.8
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 2.4e-154 548.9 294 91.8
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.4e-153 545.0 294 91.2
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 4.5e-153 544.7 294 90.5
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 4.5e-153 544.7 294 90.5
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 6.7e-149 530.8 294 87.4
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 6.7e-149 530.8 293 87.7
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 8.7e-149 530.4 294 87.1
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.9e-148 529.3 294 86.4
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 2.5e-148 528.9 294 87.4
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 5.7e-148 527.7 292 87.0
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 7.4e-148 527.3 294 85.7
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 3.7e-147 525.0 294 85.7
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 4.8e-147 524.6 294 86.1
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 4.8e-147 524.6 294 86.7
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 6.3e-147 524.2 294 85.7
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 8.2e-147 523.9 294 86.1
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 8.2e-147 523.9 294 86.1
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 1.4e-146 523.1 294 86.4
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.4e-146 523.1 294 86.7
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 2.4e-146 522.3 294 86.7
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 4.1e-146 521.5 290 85.9
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.2e-145 520.0 294 86.4
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 1.5e-145 519.6 294 85.0
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 2.6e-145 518.8 294 84.0
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 4.5e-145 518.1 290 85.5
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 5.9e-145 517.7 294 85.0
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 5.9e-145 517.7 294 85.7
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 5.9e-145 517.7 294 85.7
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 5.9e-145 517.7 294 84.0
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 7.7e-145 517.3 294 84.7
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 7.7e-145 517.3 294 84.7
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 1.3e-144 516.5 290 85.2
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 1.3e-144 516.5 294 85.0
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 1.7e-144 516.2 292 85.6
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.2e-144 515.8 294 84.4
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 3.8e-144 515.0 294 86.1
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 1.1e-143 513.5 282 87.2
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 1.1e-143 513.5 294 85.4
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 1.4e-143 513.1 291 86.3
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 1.9e-143 512.7 292 84.9
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 9.4e-143 510.4 292 84.6
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 9.4e-143 510.4 289 84.8
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 1.2e-142 510.0 294 84.7
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 2.1e-142 509.2 294 83.7
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 2.7e-142 508.8 294 84.7
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 4.6e-142 508.1 292 82.9
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 1.0e-141 506.9 291 84.5
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 1.0e-141 506.9 292 82.9
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 1.4e-141 506.5 294 83.0
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 1.8e-141 506.1 294 81.6
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 2.3e-141 505.8 294 81.6
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 3.9e-141 505.0 291 83.2
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 3.9e-141 505.0 323 76.8
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 5.1e-141 504.6 294 82.7
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 6.7e-141 504.2 290 82.1
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 6.7e-141 504.2 294 83.7
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 8.8e-141 503.8 289 83.7
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 8.8e-141 503.8 289 83.7
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 8.8e-141 503.8 290 81.4
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 8.8e-141 503.8 290 82.8
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 1.5e-140 503.1 294 81.0
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 2.0e-140 502.7 294 81.0
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 2.0e-140 502.7 294 81.0
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 2.0e-140 502.7 294 82.3
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 2.5e-140 502.3 292 83.2
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 2.5e-140 502.3 290 82.8
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 4.3e-140 501.5 289 82.7
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 5.7e-140 501.1 294 80.6
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 1.3e-139 500.0 294 80.3
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 1.3e-139 500.0 292 81.2
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 1.7e-139 499.6 294 80.3
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 2.8e-139 498.8 294 85.0
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.7e-139 498.4 294 82.7
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 6.3e-139 497.7 294 83.3
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 8.2e-139 497.3 294 79.6
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 1.1e-138 496.9 294 79.9
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 1.1e-138 496.9 292 82.5
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 1.4e-138 496.5 294 82.7
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 1.8e-138 496.1 294 79.9
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 6.9e-138 494.2 294 79.9
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 9.1e-138 493.8 289 82.0
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 1.5e-137 493.0 294 78.9
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 1.5e-137 493.0 294 78.9
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 2.0e-137 492.7 294 78.9
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 2.0e-137 492.7 294 78.9
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 1.7e-136 489.6 293 78.2
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 1.7e-136 489.6 292 79.8
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.2e-136 489.2 253 93.3
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 2.2e-136 489.2 292 79.8
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 1.4e-135 486.5 274 85.8
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 2.1e-134 482.6 276 85.1
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 4.7e-134 481.5 291 78.0
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 4.7e-134 481.5 280 82.9
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.7e-134 481.5 289 81.3
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 1.4e-133 479.9 293 77.5
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 1.4e-133 479.9 293 77.8
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.8e-133 479.6 292 79.1
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 6.7e-133 477.6 275 84.7
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 7.4e-132 474.2 291 80.1
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 4.8e-131 471.5 294 79.6
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 8.2e-131 470.7 291 76.6
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 4.1e-130 468.4 315 75.6
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 2.6e-129 465.7 292 78.1
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 3.5e-129 465.3 274 82.8
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 3.8e-128 461.8 296 74.3
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 1.5e-124 449.9 294 77.2
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 1.2e-121 440.3 311 71.1
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 4.5e-121 438.3 289 72.0
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 1.5e-116 423.3 290 70.3
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 5.7e-116 421.4 273 76.9
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 6.3e-115 417.9 283 68.6
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 7.2e-111 404.4 275 70.2
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 3.6e-110 402.1 268 71.3
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 1.4e-106 390.2 283 65.7
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 4.9e-99 365.2 225 79.1
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 4.3e-95 352.1 323 59.4
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 1.1e-85 320.9 192 81.2
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 2.2e-83 313.2 185 83.2
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 6.4e-83 311.6 188 81.9
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 3.5e-81 305.8 291 51.9
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 5.1e-80 302.0 175 84.0
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 1.2e-78 297.4 297 53.2
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 2.1e-78 296.6 188 74.5
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 1.5e-76 290.4 296 51.4
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 1.6e-70 270.4 295 46.1
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 4.2e-58 229.2 164 69.5
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 2.1e-57 226.9 312 44.9
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.6e-52 209.9 226 53.1
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.4e-50 204.1 223 52.9
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 4.6e-49 199.1 106 87.7
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 8.4e-43 178.3 103 83.5
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.2e-42 176.4 100 85.0
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 8.7e-40 168.3 97 83.5
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 5.3e-29 132.5 76 84.2
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.8e-22 109.4 166 41.0
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.2e-20 104.8 97 59.8
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 2.7e-09 67.0 51 60.8
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 1.2e-07 61.6 40 80.0


User provided reference genes

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