Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 7.8e-310 1066.2 515 100.0
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 1.1e-287 992.6 515 92.6
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 1.2e-281 972.6 515 89.7
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.8e-281 970.3 515 89.5
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 7.8e-278 959.9 515 88.0
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.2e-275 952.6 515 87.4
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 3.6e-267 924.5 516 85.9
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 1.6e-238 829.3 515 76.9
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 3.6e-238 828.2 509 76.2
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.4e-234 816.2 502 76.7
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 1.4e-234 816.2 514 76.1
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 4.1e-234 814.7 518 75.5
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 9.1e-234 813.5 511 75.9
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 1.2e-233 813.1 509 75.4
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 2.6e-233 812.0 504 76.6
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 3.2e-231 805.1 518 74.1
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 4.2e-231 804.7 507 76.5
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.0e-229 800.0 514 74.3
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.0e-229 800.0 514 74.3
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 1.0e-229 800.0 510 75.3
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 5.1e-229 797.7 505 75.4
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 6.7e-229 797.3 510 75.1
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 4.8e-227 791.2 508 75.0
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 4.8e-227 791.2 515 72.4
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 8.2e-227 790.4 508 74.8
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 8.2e-227 790.4 509 74.7
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 1.8e-226 789.3 518 72.8
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 2.4e-226 788.9 510 73.5
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 2.2e-224 782.3 490 74.3
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 2.9e-224 781.9 516 72.9
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 3.6e-222 775.0 505 71.7
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 8.0e-222 773.9 504 73.2
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 8.0e-222 773.9 510 73.5
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 8.0e-222 773.9 497 73.2
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 3.0e-221 771.9 516 72.5
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 2.6e-220 768.8 505 71.3
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 5.7e-220 767.7 513 72.1
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 2.2e-219 765.8 505 72.9
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 2.2e-219 765.8 497 73.6
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 2.8e-219 765.4 485 73.2
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 1.1e-218 763.5 486 73.7
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.1e-218 763.5 509 72.1
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 1.8e-218 762.7 509 70.7
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.4e-218 762.3 509 72.1
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 2.4e-218 762.3 517 71.6
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 3.1e-218 761.9 514 71.4
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 4.1e-218 761.5 516 72.5
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 4.1e-218 761.5 509 70.9
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 4.1e-218 761.5 497 71.8
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 5.3e-218 761.1 508 71.5
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 5.3e-218 761.1 488 74.2
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 1.0e-216 756.9 513 70.6
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 2.2e-216 755.7 520 69.2
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 2.9e-216 755.4 517 70.8
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 8.5e-216 753.8 517 70.8
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 4.2e-215 751.5 547 66.7
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 1.6e-214 749.6 487 71.5
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 1.4e-213 746.5 499 71.3
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 1.8e-213 746.1 512 70.5
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 5.2e-213 744.6 465 76.1
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 2.6e-212 742.3 491 71.5
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 7.5e-212 740.7 487 70.8
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 2.2e-211 739.2 472 74.6
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 2.4e-210 735.7 490 70.4
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 9.1e-210 733.8 520 67.9
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 9.1e-210 733.8 510 67.8
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 2.0e-209 732.6 502 70.3
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.5e-209 731.9 477 73.6
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 5.9e-209 731.1 526 67.9
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 7.7e-209 730.7 508 68.7
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 3.2e-207 725.3 504 68.7
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 7.2e-207 724.2 503 69.8
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 1.2e-206 723.4 503 69.4
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 1.6e-206 723.0 455 74.5
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 2.1e-206 722.6 486 68.5
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 4.7e-206 721.5 507 69.6
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 4.7e-206 721.5 507 69.8
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 4.7e-206 721.5 507 69.6
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 1.4e-205 719.9 507 69.2
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 5.4e-202 708.0 511 65.8
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 9.1e-202 707.2 508 68.9
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 2.7e-201 705.7 460 73.7
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 2.7e-201 705.7 481 69.0
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 3.8e-200 701.8 459 72.3
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 8.6e-200 700.7 512 65.2
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 1.5e-199 699.9 492 68.9
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 1.9e-199 699.5 511 67.5
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 5.5e-199 698.0 499 67.9
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 7.2e-199 697.6 524 63.9
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 1.2e-198 696.8 550 63.6
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 4.7e-198 694.9 476 67.4
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 4.9e-195 684.9 491 66.6
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 5.4e-194 681.4 487 66.5
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 1.1e-191 673.7 490 67.8
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 6.2e-174 614.8 520 60.6
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.1e-169 599.7 318 89.0
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 3.9e-168 595.5 309 90.9
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 1.2e-166 590.5 512 56.4
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 4.6e-161 572.0 381 72.4
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 4.6e-153 545.4 373 71.0
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 1.4e-141 507.3 355 67.3
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 1.5e-140 503.8 364 68.7
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 7.4e-135 485.0 358 63.4
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 4.2e-122 442.6 499 50.3
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 2.5e-90 337.0 225 65.3
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 8.6e-83 312.0 225 61.3
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 3.3e-82 310.1 178 81.5
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 1.9e-66 257.7 183 66.1
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 1.0e-59 235.3 149 75.8
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 5.2e-56 223.0 148 66.2
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 1.4e-21 108.6 115 51.3
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 2.6e-15 87.8 53 67.9
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 1.6e-12 78.6 79 49.4
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 3.9e-11 73.9 78 50.0


User provided reference genes

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