Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 8.6e-189 665.2 814 100.0
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.8e-154 551.2 814 92.8
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.4e-154 550.8 814 92.6
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.9e-148 531.2 807 92.8
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.3e-148 530.0 814 91.4
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.0e-93 349.4 816 80.4
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 6.1e-86 323.6 817 79.6
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 4.4e-84 317.4 816 79.8
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.3e-80 305.8 254 63.8
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 2.3e-80 305.1 815 79.4
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 5.0e-80 303.9 253 65.2
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 3.3e-79 301.2 254 62.6
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 3.6e-78 297.7 804 79.6
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 6.8e-77 293.5 817 78.6
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.5e-76 292.4 809 78.5
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.5e-76 292.4 777 79.9
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 4.9e-75 287.3 253 60.5
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.2e-73 282.7 156 87.8
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 3.0e-72 278.1 253 58.5
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 5.1e-72 277.3 246 61.4
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 1.1e-71 276.2 821 77.3
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 3.3e-71 274.6 817 77.6
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.8e-70 271.6 254 57.1
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 2.8e-70 271.6 252 57.1
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 3.6e-70 271.2 251 57.0
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 4.7e-70 270.8 248 57.7
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 4.7e-70 270.8 745 83.4
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.1e-69 269.6 746 82.0
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.4e-69 269.2 773 79.3
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.4e-69 269.2 826 76.9
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 8.9e-69 266.5 253 57.7
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.2e-68 266.2 816 76.6
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.5e-68 265.8 773 79.7
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.5e-68 265.8 253 57.3
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 4.4e-68 264.2 253 55.3
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 7.5e-68 263.5 779 78.3
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 4.9e-67 260.8 231 57.1
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 8.3e-67 260.0 821 74.8
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.4e-66 258.5 821 55.7
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.4e-66 258.5 772 66.8
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 6.0e-65 253.8 774 78.7
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 6.0e-65 253.8 232 56.9
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 7.8e-65 253.4 255 58.0
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.0e-64 253.1 234 54.7
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-64 252.7 242 60.7
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.3e-64 252.7 267 54.7
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.9e-63 248.8 243 55.6
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.6e-62 245.7 210 61.4
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 4.7e-62 244.2 260 51.2
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-61 243.0 243 56.4
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.8e-61 242.3 821 74.9
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 4.0e-61 241.1 820 73.9
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.2e-60 239.6 226 56.6
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 3.4e-60 238.0 183 66.7
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.8e-60 237.3 184 66.8
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.7e-59 235.7 227 54.2
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 2.9e-59 235.0 242 55.4
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.9e-59 235.0 265 51.3
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.4e-58 232.6 297 46.8
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.4e-58 232.6 173 68.2
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.4e-58 232.6 173 68.2
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 2.4e-58 231.9 245 55.9
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 2.4e-58 231.9 252 50.8
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 3.2e-58 231.5 175 66.9
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 3.2e-58 231.5 252 52.8
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 5.4e-58 230.7 242 55.8
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 9.2e-58 229.9 254 53.9
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 9.2e-58 229.9 248 52.4
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-57 228.4 151 74.8
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-57 228.4 151 74.8
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.5e-57 228.0 213 55.4
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.3e-56 226.1 171 64.3
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 5.1e-56 224.2 197 58.4
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 2.5e-55 221.9 244 50.4
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.2e-54 219.5 264 47.7
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-54 218.8 204 58.8
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 2.1e-54 218.8 218 54.6
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 6.2e-54 217.2 209 55.5
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.2e-54 217.2 200 60.0
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.1e-53 214.9 204 57.4
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.2e-52 213.0 201 56.2
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 3.4e-52 211.5 195 56.9
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-51 209.5 184 60.3
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 5.1e-48 197.6 675 85.3
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 2.5e-47 195.3 228 50.0
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 7.3e-47 193.7 230 51.7
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 7.3e-47 193.7 150 60.0
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 9.6e-47 193.4 197 54.3
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.8e-45 189.1 175 52.6
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.8e-45 189.1 688 83.3
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 5.3e-45 187.6 120 79.2
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 3.4e-44 184.9 223 48.0
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 3.4e-44 184.9 201 52.2
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 5.8e-44 184.1 239 43.9
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 9.9e-44 183.3 150 57.3
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 1.7e-43 182.6 136 67.6
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.7e-43 182.6 222 47.3
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.7e-43 182.6 222 47.3
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.2e-43 182.2 125 73.6
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 2.4e-42 178.7 161 54.0
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.7e-41 175.3 169 56.2
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.8e-40 172.6 157 58.0
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.8e-40 172.6 158 59.5
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 2.3e-40 172.2 225 44.4
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 3.9e-40 171.4 154 53.2
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 6.7e-40 170.6 112 75.0
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.5e-39 168.7 135 65.9
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 5.6e-39 167.5 158 53.8
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.4e-39 167.2 184 52.7
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 2.8e-38 165.2 207 48.3
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.4e-37 162.9 216 46.8
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 5.3e-37 161.0 214 46.7
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.4e-36 158.3 165 52.1
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 8.4e-35 153.7 148 50.7
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.1e-34 153.3 145 49.7
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.4e-34 152.9 147 54.4
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.9e-34 152.5 215 45.1
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 2.5e-34 152.1 215 44.2
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 3.5e-33 148.3 156 48.7
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.5e-31 142.9 200 43.5
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.6e-30 139.4 212 39.6
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.1e-30 139.0 133 49.6
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 3.1e-29 135.2 152 44.7
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 5.8e-28 131.0 212 42.0
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 5.8e-28 131.0 150 44.7
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-24 119.4 109 50.5
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 8.7e-24 117.1 139 44.6
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.8e-21 109.4 105 57.1
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 4.8e-14 84.7 117 41.0
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 1.9e-10 72.8 43 86.0
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 8.8e-08 63.9 167 27.5
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 1.5e-07 63.2 157 28.0
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 4.4e-07 61.6 175 26.3
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 7.4e-07 60.8 150 30.0
PSO339G0892 Papaver somniferum HOM05D007559 ORTHO05D009642 9.7e-07 60.5 118 28.8
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 1.3e-06 60.1 147 28.6
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 1.7e-06 59.7 150 28.0
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 2.8e-06 58.9 143 28.7
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 4.8e-06 58.2 146 28.8
Cc01_g05040 Coffea canephora HOM05D007409 ORTHO05D009264 4.8e-06 58.2 141 27.7
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 4.8e-06 58.2 143 26.6
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 6.3e-06 57.8 149 28.9


User provided reference genes

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