Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 2.9e-261 904.8 500 100.0
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 1.7e-232 809.3 502 90.6
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 1.2e-227 793.1 501 88.0
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 2.3e-226 788.9 501 88.0
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 5.5e-220 767.7 501 86.4
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.8e-218 762.7 501 85.8
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 1.2e-190 670.2 500 71.6
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 1.0e-189 667.2 503 73.0
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 1.7e-189 666.4 500 71.2
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 1.1e-188 663.7 501 72.3
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 2.5e-188 662.5 501 72.3
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 2.5e-188 662.5 498 71.3
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 9.5e-188 660.6 500 72.6
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 9.5e-188 660.6 500 72.6
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 1.6e-187 659.8 499 73.1
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 1.5e-185 653.3 503 70.8
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 9.9e-185 650.6 500 71.2
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 1.7e-184 649.8 501 71.5
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 1.7e-184 649.8 500 69.4
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 2.3e-181 639.4 501 69.9
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 3.3e-180 635.6 501 68.5
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 1.6e-179 633.3 499 67.3
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 3.6e-179 632.1 504 69.0
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 4.7e-179 631.7 500 68.6
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 1.1e-178 630.6 498 70.1
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 1.8e-178 629.8 500 69.6
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 4.0e-178 628.6 500 69.6
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 2.6e-177 625.9 500 69.0
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 5.8e-177 624.8 502 69.1
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 2.4e-175 619.4 502 70.1
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 3.2e-175 619.0 502 68.3
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 4.6e-174 615.1 502 70.5
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 4.6e-174 615.1 514 70.0
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 5.1e-173 611.7 502 69.9
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 1.1e-172 610.5 500 66.8
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 1.1e-172 610.5 500 66.0
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 1.9e-172 609.8 513 64.9
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 2.5e-172 609.4 500 66.4
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 9.6e-172 607.4 501 65.1
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 1.2e-171 607.1 501 66.7
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 8.1e-171 604.4 492 67.1
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 6.9e-170 601.3 502 68.9
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 2.2e-168 596.3 502 68.9
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 1.1e-167 594.0 500 64.8
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 5.4e-167 591.7 500 67.2
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 9.3e-167 590.9 501 65.1
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 2.7e-166 589.3 530 64.2
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 7.8e-166 587.8 508 64.8
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 1.5e-164 583.6 499 62.7
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 9.6e-164 580.9 500 61.2
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 3.6e-163 578.9 500 64.2
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 7.6e-161 571.2 502 64.5
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 1.7e-160 570.1 503 65.4
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 2.2e-160 569.7 526 62.7
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 3.8e-160 568.9 503 60.8
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 6.4e-160 568.2 519 63.0
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 1.4e-159 567.0 519 60.3
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 1.2e-158 563.9 503 62.0
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 2.7e-158 562.8 511 61.6
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 7.9e-158 561.2 503 61.2
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 6.2e-155 551.6 510 61.6
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 8.1e-155 551.2 517 61.5
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 1.1e-154 550.8 518 63.5
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 1.1e-154 550.8 520 60.4
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 5.3e-154 548.5 500 62.4
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 5.8e-153 545.0 512 62.5
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 1.7e-152 543.5 516 59.9
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 2.2e-152 543.1 518 60.2
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 3.8e-152 542.3 512 60.5
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 4.9e-152 542.0 513 59.6
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.6e-150 537.0 512 59.8
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 7.9e-150 534.6 512 58.6
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 7.9e-150 534.6 513 61.0
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 3.0e-149 532.7 511 57.3
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 2.5e-148 529.6 555 56.9
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 1.1e-146 524.2 514 60.1
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 5.3e-146 521.9 505 58.0
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 4.2e-143 512.3 504 58.3
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 1.6e-142 510.4 513 57.7
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 2.7e-142 509.6 512 58.6
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 2.7e-142 509.6 515 57.7
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 1.1e-140 504.2 516 59.1
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 9.7e-140 501.1 526 56.5
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 9.7e-140 501.1 502 58.4
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 3.7e-139 499.2 510 57.3
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 2.0e-137 493.4 513 58.1
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 3.4e-137 492.7 513 58.1
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 1.0e-136 491.1 549 55.4
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 8.5e-136 488.0 408 61.0
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 2.4e-130 469.9 499 56.1
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 6.9e-130 468.4 503 56.5
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 1.5e-129 467.2 359 73.3
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 1.7e-128 463.8 349 68.5
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 3.2e-127 459.5 364 69.8
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 4.8e-123 445.7 521 52.2
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 3.6e-118 429.5 331 71.6
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 2.7e-97 360.1 502 45.8
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 2.5e-95 353.6 514 42.4
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 4.2e-95 352.8 518 42.7
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 6.8e-93 345.5 353 58.1
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 3.9e-88 329.7 745 36.0
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 5.2e-69 266.2 358 47.2
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 1.5e-68 264.6 192 70.3
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 2.9e-59 233.8 563 35.3
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 2.6e-44 184.1 188 54.3
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 1.0e-35 155.6 145 55.9
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 3.9e-32 143.7 323 39.3
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 3.9e-24 117.1 111 55.0
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 3.9e-24 117.1 323 35.9
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 6.5e-19 99.8 150 41.3
TAR636G2565 Trochodendron aralioides HOM05D007019 ORTHO05D008398 4.4e-07 60.5 43 76.7
arahy.Tifrunner.gnm1.ann1.YXSX85 Arachis hypogaea HOM05D004574 ORTHO05D005612 2.8e-06 57.8 69 43.5
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 2.8e-06 57.8 65 44.6
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 6.3e-06 56.6 62 46.8
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 6.3e-06 56.6 48 54.2
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 6.3e-06 56.6 44 59.1
AUR62041455 Chenopodium quinoa HOM05D004574 ORTHO05D005612 8.2e-06 56.2 68 41.2
Cre07.g355700 Chlamydomonas reinhardtii HOM05D007019 ORTHO05D008398 8.2e-06 56.2 257 30.4


User provided reference genes

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