Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G013200 Theobroma cacao HOM05D007253 ORTHO05D009055 1.0e-71 273.5 157 100.0
COL.COLO4_18974 Corchorus olitorius HOM05D007253 ORTHO05D009055 2.7e-64 248.8 157 91.1
Duzib187G0122 Durio zibethinus HOM05D007253 ORTHO05D009055 1.8e-63 246.1 157 86.0
Gohir.D05G063600 Gossypium hirsutum HOM05D007253 ORTHO05D009055 2.5e-57 225.7 157 84.1
Gorai.009G064300 Gossypium raimondii HOM05D007253 ORTHO05D009055 1.2e-56 223.4 157 84.7
Duzib168G0559 Durio zibethinus HOM05D007253 ORTHO05D009055 1.4e-47 193.4 138 84.8
TWI63G1073 Tripterygium wilfordii HOM05D007253 ORTHO05D009055 5.9e-43 177.9 159 69.8
Ciclev10009764m.g Citrus clementina HOM05D007253 ORTHO05D009055 2.2e-42 176.0 155 71.6
Prupe.1G396700 Prunus persica HOM05D007253 ORTHO05D009055 6.5e-42 174.5 159 73.0
Dinv03404 Davidia involucrata HOM05D007253 ORTHO05D009055 9.4e-41 170.6 158 70.9
CSS0046604 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 2.7e-40 169.1 158 67.7
CSS0050010 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 2.7e-40 169.1 158 67.7
CSS0024958 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 3.6e-40 168.7 162 65.4
CSS0026470 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 3.6e-40 168.7 148 69.6
CiPaw.07G233200 Carya illinoinensis HOM05D007253 ORTHO05D009055 7.9e-40 167.5 157 68.8
Manes.03G007000 Manihot esculenta HOM05D007253 ORTHO05D009055 6.7e-39 164.5 150 71.3
ClCG05G016120 Citrullus lanatus HOM05D007253 ORTHO05D009055 7.4e-38 161.0 158 67.7
Nn8g40104 Nelumbo nucifera HOM05D007253 ORTHO05D009055 7.4e-38 161.0 159 63.5
Atru.chr7.2576 Acer truncatum HOM05D007253 ORTHO05D009055 1.3e-37 160.2 159 65.4
Cpa.g.sc148.44 Carica papaya HOM05D007253 ORTHO05D009055 1.3e-37 160.2 135 77.8
RcHm_v2.0_Chr6g0299201 Rosa chinensis HOM05D007253 ORTHO05D009055 4.8e-37 158.3 158 69.0
Eucgr.C04033 Eucalyptus grandis HOM05D007253 ORTHO05D009055 8.2e-37 157.5 158 69.0
FAN27G1409 Fragaria x ananassa HOM05D007253 ORTHO05D009055 1.4e-36 156.8 153 69.3
PGR044G0212 Punica granatum HOM05D007253 ORTHO05D009055 1.4e-36 156.8 160 68.8
Sed0002011 Sechium edule HOM05D007253 ORTHO05D009055 1.8e-36 156.4 150 66.0
TAR626G1108 Trochodendron aralioides HOM05D007253 ORTHO05D009055 1.8e-36 156.4 157 64.3
FvH4_2g41340 Fragaria vesca HOM05D007253 ORTHO05D009055 4.1e-36 155.2 153 68.6
MELO3C016946.2 Cucumis melo HOM05D007253 ORTHO05D009055 5.3e-36 154.8 156 67.9
Actinidia14140 Actinidia chinensis HOM05D007253 ORTHO05D009055 9.1e-36 154.1 158 65.2
GSVIVG01035999001 Vitis vinifera HOM05D007253 ORTHO05D009055 2.0e-35 152.9 108 85.2
BolC4t27019H Brassica oleracea HOM05D007253 ORTHO05D009055 3.5e-35 152.1 154 68.2
ATR0580G321 Amborella trichopoda HOM05D007253 ORTHO05D009055 5.9e-35 151.4 106 86.8
A04p19250 Brassica napus HOM05D007253 ORTHO05D009055 5.9e-35 151.4 154 68.2
BraA04t17525Z Brassica rapa HOM05D007253 ORTHO05D009055 5.9e-35 151.4 154 68.2
Potri.006G266800 Populus trichocarpa HOM05D007253 ORTHO05D009055 7.7e-35 151.0 158 65.8
BcaB06g28020 Brassica carinata HOM05D007253 ORTHO05D009055 1.7e-34 149.8 154 67.5
BcaC02g08395 Brassica carinata HOM05D007253 ORTHO05D009055 1.7e-34 149.8 154 67.5
C04p54740 Brassica napus HOM05D007253 ORTHO05D009055 1.7e-34 149.8 154 67.5
FAN15G3156 Fragaria x ananassa HOM05D007253 ORTHO05D009055 3.8e-34 148.7 121 76.0
MD15G1043300 Malus domestica HOM05D007253 ORTHO05D009055 3.8e-34 148.7 159 67.3
Cc08_g07700 Coffea canephora HOM05D007253 ORTHO05D009055 6.5e-34 147.9 103 83.5
HPP92_010354 Vanilla planifolia HOM05D007253 ORTHO05D009055 6.5e-34 147.9 99 88.9
PSO063G6023 Papaver somniferum HOM05D007253 ORTHO05D009055 8.5e-34 147.5 114 80.7
CANSAT35G1478 Cannabis sativa HOM05D007253 ORTHO05D009055 1.1e-33 147.1 159 62.3
Sc09g0010780 Simmondsia chinensis HOM05D007253 ORTHO05D009055 1.1e-33 147.1 156 64.1
Gohir.A05G061100 Gossypium hirsutum HOM05D007253 ORTHO05D009055 2.5e-33 146.0 95 80.0
Sp4g03910 Schrenkiella parvula HOM05D007253 ORTHO05D009055 2.5e-33 146.0 101 87.1
CARHR116800 Cardamine hirsuta HOM05D007253 ORTHO05D009055 5.5e-33 144.8 102 84.3
Lj1g0002882 Lotus japonicus HOM05D007253 ORTHO05D009055 7.2e-33 144.4 160 59.4
PSO782G0429 Papaver somniferum HOM05D007253 ORTHO05D009055 7.2e-33 144.4 114 79.8
Oeu023241.1 Olea europaea HOM05D007253 ORTHO05D009055 9.4e-33 144.1 103 83.5
THA.LOC104803610 Tarenaya hassleriana HOM05D007253 ORTHO05D009055 1.2e-32 143.7 102 84.3
Thhalv10000367m.g Eutrema salsugineum HOM05D007253 ORTHO05D009055 1.6e-32 143.3 115 78.3
SalBow8G5515 Salvia bowleyana HOM05D007253 ORTHO05D009055 1.6e-32 143.3 107 80.4
HanXRQChr13g0413301 Helianthus annuus HOM05D007253 ORTHO05D009055 2.1e-32 142.9 110 78.2
Medtr3g105830 Medicago truncatula HOM05D007253 ORTHO05D009055 3.6e-32 142.1 120 75.8
AT2G24860 Arabidopsis thaliana HOM05D007253 ORTHO05D009055 6.1e-32 141.4 101 84.2
AL4G15950 Arabidopsis lyrata HOM05D007253 ORTHO05D009055 8.0e-32 141.0 100 85.0
Aa31LG7G11560 Aethionema arabicum HOM05D007253 ORTHO05D009055 1.0e-31 140.6 155 64.5
Carub.0004s0449 Capsella rubella HOM05D007253 ORTHO05D009055 1.0e-31 140.6 102 83.3
Psat5g033080 Pisum sativum HOM05D007253 ORTHO05D009055 1.0e-31 140.6 130 70.8
Potri.018G016400 Populus trichocarpa HOM05D007253 ORTHO05D009055 1.0e-31 140.6 100 86.0
MBI14_g31385_MAGBIO Magnolia biondii HOM05D007253 ORTHO05D009055 4.0e-31 138.7 99 85.9
Nitab4.5_0000264g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 4.0e-31 138.7 100 83.0
MD08G1052200 Malus domestica HOM05D007253 ORTHO05D009055 6.7e-31 137.9 125 60.0
CDE05G3047 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 8.8e-31 137.5 106 84.0
Nitab4.5_0005450g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 1.2e-30 137.1 100 80.0
SGA_v2.0_scaffold4G02163 Striga asiatica HOM05D007253 ORTHO05D009055 1.2e-30 137.1 103 80.6
TPR.G1881 Trifolium pratense HOM05D007253 ORTHO05D009055 1.5e-30 136.7 154 61.7
Lsat_1_v5_gn_6_77860 Lactuca sativa HOM05D007253 ORTHO05D009055 2.6e-30 136.0 101 83.2
Hund25608 Selenicereus undatus HOM05D007253 ORTHO05D009055 2.6e-30 136.0 109 72.5
Migut.E01444 Erythranthe guttata HOM05D007253 ORTHO05D009055 3.3e-30 135.6 105 80.0
CAN.G285.13 Capsicum annuum HOM05D007253 ORTHO05D009055 4.4e-30 135.2 155 58.1
Glyma.17G221800 Glycine max HOM05D007253 ORTHO05D009055 4.4e-30 135.2 105 81.0
arahy.Tifrunner.gnm1.ann1.LF5WZD Arachis hypogaea HOM05D007253 ORTHO05D009055 5.7e-30 134.8 105 79.0
arahy.Tifrunner.gnm1.ann1.G7TND8 Arachis hypogaea HOM05D007253 ORTHO05D009055 7.5e-30 134.4 103 79.6
Glyma.06G060300 Glycine max HOM05D007253 ORTHO05D009055 7.5e-30 134.4 106 78.3
arahy.Tifrunner.gnm1.ann1.2K72KI Arachis hypogaea HOM05D007253 ORTHO05D009055 9.7e-30 134.0 103 79.6
Aqoxy7G03301 Aquilegia oxysepala HOM05D007253 ORTHO05D009055 1.7e-29 133.3 103 61.2
Solyc08g006620.3 Solanum lycopersicum HOM05D007253 ORTHO05D009055 2.2e-29 132.9 102 78.4
Sopen08g002570 Solanum pennellii HOM05D007253 ORTHO05D009055 2.2e-29 132.9 102 78.4
Glyma.14G104200 Glycine max HOM05D007253 ORTHO05D009055 2.8e-29 132.5 105 80.0
Phvul.009G086100 Phaseolus vulgaris HOM05D007253 ORTHO05D009055 2.8e-29 132.5 157 59.9
Glyma.04G059900 Glycine max HOM05D007253 ORTHO05D009055 3.7e-29 132.1 104 76.0
MSTRG.13960 Avicennia marina HOM05D007253 ORTHO05D009055 4.8e-29 131.7 102 79.4
ECA240G1715 Erigeron canadensis HOM05D001941 ORTHO05D002198 6.3e-29 131.3 159 57.9
DCAR_000661 Daucus carota HOM05D007253 ORTHO05D009055 1.1e-28 130.6 103 79.6
Os09g0423700 Oryza sativa ssp. japonica HOM05D007253 ORTHO05D009055 1.1e-28 130.6 101 76.2
CDE02G4354 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 5.3e-28 128.3 93 86.0
Lalb_Chr23g0268151 Lupinus albus HOM05D007253 ORTHO05D009055 9.1e-28 127.5 99 77.8
Ah.00g238170 Amaranthus hybridus HOM05D007253 ORTHO05D009055 1.3e-26 123.6 103 71.8
Ah.12g060580 Amaranthus hybridus HOM05D007253 ORTHO05D009055 1.3e-26 123.6 103 71.8
vmacro05116 Vaccinium macrocarpon HOM05D007253 ORTHO05D009055 1.3e-26 123.6 140 62.1
EL10Ac2g02465 Beta vulgaris HOM05D007253 ORTHO05D009055 2.2e-26 122.9 159 54.1
unitig_32.g11120 Utricularia gibba HOM05D007253 ORTHO05D009055 2.2e-26 122.9 98 79.6
Zm00001eb313320 Zea mays HOM05D007253 ORTHO05D009055 6.5e-26 121.3 81 67.9
SEGI_37228 Sequoiadendron giganteum HOM05D007253 ORTHO05D009055 3.6e-24 115.5 106 69.8
Pp3c6_11160 Physcomitrium patens HOM05D007253 ORTHO05D009055 6.1e-24 114.8 102 69.6
AagrBONN_evm.TU.Sc2ySwM_117.2542 Anthoceros agrestis HOM05D007253 ORTHO05D009055 1.8e-23 113.2 89 77.5
TAR383G0216 Trochodendron aralioides HOM05D007253 ORTHO05D009055 2.3e-23 112.8 80 85.0
Peaxi162Scf00045g01937 Petunia axillaris HOM05D007253 ORTHO05D009055 5.7e-22 108.2 75 88.0
Mapoly0121s0030 Marchantia polymorpha HOM05D007253 ORTHO05D009055 8.3e-21 104.4 89 70.8
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 2.4e-20 102.8 75 80.0
SMO196G0205 Selaginella moellendorffii HOM05D007253 ORTHO05D009055 9.1e-20 100.9 83 72.3
AUR62032436 Chenopodium quinoa HOM05D007253 ORTHO05D009055 1.2e-19 100.5 79 77.2
QL02p017999 Quercus lobata HOM05D007253 ORTHO05D009055 8.0e-08 61.2 76 55.3
Haze_21370 Corylus avellana HOM05D007253 ORTHO05D009055 1.0e-07 60.8 93 45.2
Cfa013009 Carpinus fangiana HOM05D018710 ORTHO05D009055 2.3e-07 59.7 81 50.6


User provided reference genes

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