Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.1e-98 363.2 180 100.0
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 9.0e-96 353.6 180 96.1
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 9.0e-96 353.6 180 97.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 9.0e-96 353.6 180 96.1
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 3.4e-95 351.7 179 96.1
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 5.8e-95 350.9 179 96.1
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 5.8e-95 350.9 180 96.1
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.2e-94 349.0 180 95.0
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 2.4e-93 345.5 179 93.3
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 3.2e-93 345.1 179 95.0
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 4.2e-93 344.7 179 93.3
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 7.9e-92 340.5 179 94.4
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.0e-91 340.1 179 91.6
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.8e-91 339.3 179 92.2
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.0e-91 338.6 179 91.1
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.9e-91 338.2 179 92.2
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 3.9e-91 338.2 179 91.6
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.1e-91 337.8 179 91.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 6.7e-91 337.4 179 92.7
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.1e-90 336.7 179 91.1
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.1e-90 336.7 179 91.1
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.5e-90 336.3 179 90.5
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.5e-90 336.3 179 90.5
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.3e-90 335.1 179 92.7
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 9.6e-90 333.6 179 93.3
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 9.6e-90 333.6 179 89.9
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.6e-89 331.6 179 89.4
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.8e-89 331.3 179 91.6
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 8.1e-89 330.5 179 88.3
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-88 330.1 180 89.4
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.8e-88 329.3 179 89.9
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 2.4e-88 328.9 180 88.9
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.1e-88 328.6 179 88.8
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 4.0e-88 328.2 175 89.1
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 5.3e-88 327.8 179 89.4
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 6.9e-88 327.4 179 90.5
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 6.9e-88 327.4 175 89.7
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.0e-87 325.9 179 88.3
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 3.4e-87 325.1 179 88.8
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.3e-86 323.2 180 89.4
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.7e-86 322.8 179 87.7
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.7e-86 322.8 167 94.0
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.2e-86 322.4 178 89.9
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 2.2e-86 322.4 175 88.6
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.9e-86 322.0 180 89.4
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 4.9e-86 321.2 179 87.7
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 4.9e-86 321.2 176 88.6
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 6.4e-86 320.9 179 84.9
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 8.4e-86 320.5 179 84.9
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 8.4e-86 320.5 180 85.6
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.1e-85 320.1 168 92.9
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 1.1e-85 320.1 175 88.0
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.1e-85 320.1 175 88.0
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 2.4e-85 318.9 180 88.9
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.2e-85 318.5 175 88.6
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 4.2e-85 318.2 175 87.4
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 7.1e-85 317.4 177 85.9
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 9.3e-85 317.0 175 87.4
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.2e-84 316.6 170 91.8
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 1.2e-84 316.6 201 81.1
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.2e-84 316.6 179 85.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.6e-84 316.2 176 85.8
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.6e-84 316.2 179 85.5
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.6e-84 316.2 175 86.3
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.6e-84 316.2 175 86.3
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.6e-84 316.2 178 86.5
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.6e-84 316.2 179 86.0
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.6e-84 316.2 177 85.9
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 2.1e-84 315.8 175 86.3
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.7e-84 315.5 175 86.9
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 2.7e-84 315.5 180 87.8
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.7e-84 315.5 169 89.9
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 3.5e-84 315.1 179 86.6
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.5e-84 315.1 177 85.9
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.6e-84 314.7 175 86.3
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 4.6e-84 314.7 175 85.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 6.0e-84 314.3 175 86.9
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 6.0e-84 314.3 177 88.1
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 6.0e-84 314.3 179 88.3
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 7.9e-84 313.9 170 88.2
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.3e-83 313.2 175 86.3
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.3e-83 313.2 175 86.3
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.3e-83 313.2 200 79.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-83 313.2 179 85.5
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-83 313.2 179 85.5
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 3.9e-83 311.6 176 88.1
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.9e-83 311.6 172 88.4
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 5.1e-83 311.2 179 82.1
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 5.1e-83 311.2 179 84.9
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 6.7e-83 310.8 181 85.1
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 6.7e-83 310.8 176 88.1
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 8.7e-83 310.5 172 87.8
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-82 309.7 176 85.2
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-82 309.7 176 85.2
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-82 309.7 176 85.2
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 1.5e-82 309.7 176 87.5
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-82 309.3 176 85.2
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.9e-82 309.3 181 85.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 4.3e-82 308.1 176 84.7
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 87.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.6e-81 306.2 176 84.7
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.6e-81 306.2 172 86.6
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.7e-81 305.1 168 90.5
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 4.8e-81 304.7 168 86.9
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.1e-81 303.9 173 86.1
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.1e-80 303.5 172 85.5
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.1e-80 302.0 169 86.4
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 4.0e-80 301.6 175 84.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 9.0e-80 300.4 168 85.7
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.0e-79 299.3 168 85.1
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.6e-79 298.9 179 81.6
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 3.4e-79 298.5 168 85.7
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 4.5e-79 298.1 168 88.7
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.0e-78 297.0 177 83.6
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.7e-78 296.2 169 85.2
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.5e-77 292.4 182 81.3
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.5e-77 292.4 182 81.3
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.2e-77 291.6 161 88.2
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.8e-75 286.2 180 80.6
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 2.3e-75 285.8 180 79.4
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 8.7e-75 283.9 168 83.3
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.9e-74 282.7 178 80.3
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.4e-74 280.8 178 79.2
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.8e-73 278.9 258 59.7
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 6.9e-72 274.2 150 90.7
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 2.9e-70 268.9 167 74.9
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.8e-70 268.5 180 74.4
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 2.5e-69 265.8 179 72.6
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 7.9e-68 260.8 148 87.2
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 2.8e-65 252.3 178 69.1
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.4e-64 250.0 179 73.7
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 8.5e-62 240.7 175 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.9e-61 239.6 174 66.1
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 8.8e-59 230.7 177 65.0
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-50 203.4 133 75.9
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.1e-48 197.2 172 57.0
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.6e-47 193.4 172 62.2
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.4e-43 180.3 100 91.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 5.9e-39 164.9 102 82.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 4.7e-36 155.2 116 69.0
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.1e-32 142.5 80 86.2
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 3.8e-30 135.6 176 41.5
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.5e-29 133.7 75 86.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.5e-29 133.7 75 86.7
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 2.5e-29 132.9 175 40.6
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.0e-27 127.5 67 89.6
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.1e-24 115.5 57 93.0
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.2e-23 114.0 100 61.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 6.6e-22 108.2 62 83.9
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 1.5e-21 107.1 209 40.2
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.5e-21 106.3 54 92.6
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.6e-20 102.4 92 60.9
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 3.4e-18 95.9 170 35.3
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.2e-17 93.2 165 37.0
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 8.6e-14 81.3 90 50.0
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.3e-11 73.2 45 75.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.1e-11 72.8 37 91.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 3.1e-11 72.8 88 48.9
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 4.0e-11 72.4 51 70.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 4.4e-10 68.9 38 89.5
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 5.8e-10 68.6 55 63.6
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 1.7e-09 67.0 38 81.6
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 1.7e-09 67.0 38 81.6
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 4.9e-09 65.5 50 66.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.9e-09 65.5 42 76.2
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 3.2e-08 62.8 43 67.4
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 5.4e-08 62.0 43 69.8
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 5.4e-08 62.0 42 69.0


User provided reference genes

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