Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 9.4e-224 781.2 718 100.0
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 4.7e-42 177.6 320 57.2
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 4.4e-40 171.0 186 52.2
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 2.1e-37 162.2 176 50.6
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 2.7e-37 161.8 178 50.6
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 1.3e-36 159.5 180 54.4
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 2.3e-36 158.7 179 49.2
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 2.5e-35 155.2 172 53.5
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 4.8e-34 151.0 168 51.8
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 5.8e-32 144.1 172 47.7
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 2.9e-31 141.7 311 54.7
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 1.1e-30 139.8 170 46.5
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 1.1e-30 139.8 178 47.2
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 9.3e-30 136.7 166 45.8
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 3.5e-29 134.8 179 43.0
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 2.3e-28 132.1 114 57.9
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 3.0e-28 131.7 178 46.1
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 3.0e-28 131.7 178 46.1
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 5.1e-28 131.0 181 47.5
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 5.1e-28 131.0 178 44.4
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 8.7e-28 130.2 168 47.6
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.5e-27 129.4 176 43.2
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 1.9e-27 129.0 173 45.1
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.5e-27 128.6 175 42.9
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 4.3e-27 127.9 168 46.4
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 7.4e-27 127.1 176 43.2
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 7.4e-27 127.1 183 47.0
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 8.1e-26 123.6 168 45.2
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 2.4e-25 122.1 148 48.0
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 4.0e-25 121.3 178 43.8
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 5.3e-25 120.9 164 42.7
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 6.9e-25 120.6 195 38.5
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 2.0e-24 119.0 179 41.3
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 2.6e-24 118.6 168 44.0
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 4.5e-24 117.9 177 78.0
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 9.9e-24 116.7 167 43.7
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.3e-23 116.3 167 41.9
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 1.7e-23 115.9 172 41.3
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 2.9e-23 115.2 114 54.4
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 1.9e-22 112.5 114 51.8
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.4e-22 112.1 189 37.6
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 2.4e-22 112.1 174 40.8
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 3.2e-22 111.7 181 41.4
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 9.3e-22 110.2 172 41.3
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 9.3e-22 110.2 175 38.9
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 1.6e-21 109.4 177 41.2
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 1.6e-21 109.4 179 41.3
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 4.6e-21 107.8 174 39.1
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 3.0e-20 105.1 176 76.1
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 3.0e-20 105.1 172 75.6
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 3.9e-20 104.8 174 38.5
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 5.1e-20 104.4 170 40.6
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 5.1e-20 104.4 174 38.5
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.9e-19 102.4 101 48.5
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 2.5e-19 102.1 178 37.1
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 7.4e-19 100.5 155 38.7
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 7.4e-19 100.5 159 42.1
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 9.6e-19 100.1 177 37.3
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 1.6e-18 99.4 101 47.5
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 2.1e-18 99.0 172 40.7
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 2.1e-18 99.0 119 44.5
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 8.2e-18 97.1 117 44.4
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 1.4e-17 96.3 163 37.4
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 1.8e-17 95.9 156 37.8
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.2e-16 93.2 176 68.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.2e-16 93.2 177 70.1
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 7.6e-16 90.5 129 45.0
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 1.7e-15 89.4 177 59.9
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 1.7e-15 89.4 177 68.9
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 3.8e-15 88.2 177 60.5
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 3.8e-15 88.2 181 37.6
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 1.9e-14 85.9 172 35.5
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 2.5e-14 85.5 121 43.0
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 3.2e-14 85.1 176 71.0
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 5.5e-14 84.3 116 42.2
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 5.5e-14 84.3 165 36.4
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 7.1e-14 84.0 165 36.4
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 7.9e-13 80.5 110 43.6
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 1.0e-12 80.1 136 39.0
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 1.3e-12 79.7 78 51.3
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 3.0e-12 78.6 176 65.9
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 8.7e-12 77.0 116 40.5
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.1e-11 76.6 87 47.1
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.5e-11 76.3 116 40.5
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 3.3e-11 75.1 178 66.9
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 3.7e-10 71.6 176 65.9
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 8.2e-10 70.5 178 50.6
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 1.1e-09 70.1 178 69.1
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 1.4e-09 69.7 172 69.8
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 1.8e-09 69.3 176 64.2
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 7.6e-08 63.9 147 76.9
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 1.9e-06 59.3 150 28.0
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 2.5e-06 58.9 116 28.4
DCAR_017077 Daucus carota HOM05D000880 ORTHO05D009684 5.5e-06 57.8 58 53.4


User provided reference genes

Program Settings