Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 1.6e-126 456.1 230 100.0
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 4.5e-76 288.5 237 67.1
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 9.9e-31 137.9 242 42.6
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 1.7e-30 137.1 231 40.3
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 3.2e-29 132.9 231 41.6
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 5.4e-29 132.1 236 38.1
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 7.8e-28 128.3 244 38.9
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 3.9e-27 125.9 237 35.0
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 7.3e-26 121.7 242 36.0
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 9.0e-24 114.8 280 33.2
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 1.2e-23 114.4 234 36.3
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.0e-23 113.6 215 37.7
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.4e-23 112.8 236 38.1
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 5.8e-23 112.1 247 35.6
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.2e-22 110.2 158 41.1
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 2.9e-22 109.8 164 39.0
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 4.9e-22 109.0 235 34.0
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.4e-22 108.2 239 34.3
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 2.4e-21 106.7 237 35.9
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.1e-20 103.6 247 35.6
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 3.5e-20 102.8 237 34.2
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 7.8e-20 101.7 244 33.6
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.3e-19 100.9 239 33.1
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.7e-19 100.5 248 33.1
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.7e-19 100.5 244 33.2
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.7e-19 100.5 238 31.9
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.0e-19 99.8 239 33.5
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 3.0e-19 99.8 243 35.0
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 5.1e-19 99.0 223 35.4
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 5.1e-19 99.0 242 33.1
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 6.6e-19 98.6 247 33.2
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.7e-19 98.2 253 33.2
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 1.9e-18 97.1 235 34.5
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 7.3e-18 95.1 237 33.3
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 9.6e-18 94.7 237 32.9
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 1.3e-17 94.4 238 32.8
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.6e-17 94.0 247 32.8
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.1e-17 93.6 246 33.3
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.1e-17 93.6 241 33.2
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.2e-17 92.0 226 32.7
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 8.1e-17 91.7 226 32.7
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 8.1e-17 91.7 234 31.2
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 8.1e-17 91.7 247 32.4
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 2.4e-16 90.1 240 32.1
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 5.3e-16 89.0 243 33.3
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 5.3e-16 89.0 245 34.3
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 5.3e-16 89.0 244 33.6
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 6.9e-16 88.6 244 34.0
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 6.9e-16 88.6 243 33.3
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 6.9e-16 88.6 245 32.7
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.2e-15 87.8 243 33.3
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 2.0e-15 87.0 241 32.0
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 2.0e-15 87.0 245 30.2
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 3.4e-15 86.3 158 37.3
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 4.5e-15 85.9 245 31.0
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 7.6e-15 85.1 239 33.1
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 7.6e-15 85.1 226 31.9
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.7e-14 84.0 238 33.6
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.7e-14 84.0 244 30.3
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 2.9e-14 83.2 251 30.3
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 3.8e-14 82.8 234 34.2
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.8e-14 82.8 226 30.5
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 8.4e-14 81.6 257 32.7
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 8.4e-14 81.6 226 31.4
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.1e-13 81.3 240 33.3
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.1e-13 81.3 268 28.0
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 1.4e-13 80.9 260 26.9
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 1.2e-12 77.8 257 31.5
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 1.6e-12 77.4 257 31.9
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.6e-12 77.4 243 28.8
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.6e-12 77.4 218 34.4
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.1e-12 77.0 240 31.2
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 2.7e-12 76.6 244 31.1
Psat2g035320 Pisum sativum HOM05D027503 ORTHO05D005506 2.7e-12 76.6 229 34.9
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 6.0e-12 75.5 193 32.1
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 6.0e-12 75.5 223 30.9
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 6.0e-12 75.5 265 27.9
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.0e-11 74.7 240 29.6
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 2.3e-11 73.6 145 40.7
Glyma.06G078900 Glycine max HOM05D027503 ORTHO05D005506 2.3e-11 73.6 186 35.5
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 5.1e-11 72.4 253 30.0
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 5.1e-11 72.4 235 30.2
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 8.7e-11 71.6 123 36.6
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 8.7e-11 71.6 123 35.8
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.1e-10 71.2 239 28.5
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.1e-10 71.2 265 27.5
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 3.3e-10 69.7 251 27.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 3.3e-10 69.7 189 32.8
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.3e-10 69.3 239 28.9
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 4.3e-10 69.3 125 36.0
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.3e-10 69.3 238 29.8
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 7.4e-10 68.6 247 30.4
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 9.6e-10 68.2 122 34.4
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.8e-09 66.6 242 28.1
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 3.7e-09 66.2 237 29.5
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 4.8e-09 65.9 129 31.0
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 4.8e-09 65.9 243 28.8
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.1e-08 64.7 239 29.7
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.4e-08 64.3 245 29.4
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.8e-08 63.9 238 29.0
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 6.9e-08 62.0 253 26.9
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 9.0e-08 61.6 119 35.3
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.2e-07 61.2 237 27.8
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 3.4e-07 59.7 236 28.8
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 4.5e-07 59.3 255 30.2
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 5.8e-07 58.9 237 30.0
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 7.6e-07 58.5 231 29.4
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.0e-06 58.2 244 32.8
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.3e-06 57.8 237 29.5
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.7e-06 57.4 236 28.8
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 4.9e-06 55.8 246 29.3
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 6.4e-06 55.5 232 28.4
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 6.4e-06 55.5 205 27.3


User provided reference genes

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