Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G195700 Theobroma cacao HOM05D000626 ORTHO05D003868 1.4e-50 202.6 98 100.0
Thecc.02G122300 Theobroma cacao HOM05D000626 ORTHO05D003868 1.5e-33 146.0 77 90.9
COL.COLO4_32455 Corchorus olitorius HOM05D000626 ORTHO05D003868 1.3e-32 142.9 77 89.6
Duzib052G0942 Durio zibethinus HOM05D000626 ORTHO05D003868 3.8e-32 141.4 77 88.3
Gohir.A13G048600 Gossypium hirsutum HOM05D000626 ORTHO05D003868 3.8e-32 141.4 77 88.3
Gohir.D13G047000 Gossypium hirsutum HOM05D000626 ORTHO05D003868 3.8e-32 141.4 77 88.3
Gohir.D04G159100 Gossypium hirsutum HOM05D000626 ORTHO05D003868 5.0e-32 141.0 77 88.3
Gorai.012G146500 Gossypium raimondii HOM05D000626 ORTHO05D003868 5.0e-32 141.0 77 88.3
Duzib132G0298 Durio zibethinus HOM05D000626 ORTHO05D003868 8.5e-32 140.2 77 87.0
Gohir.A04G117400 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.4e-31 139.4 77 87.0
CiPaw.05G061300 Carya illinoinensis HOM05D000626 ORTHO05D003868 1.9e-31 139.0 98 70.4
ClCG09G017810 Citrullus lanatus HOM05D000626 ORTHO05D003868 2.5e-31 138.7 98 68.4
VMungo1127G0953 Vigna mungo HOM05D000626 ORTHO05D003868 2.5e-31 138.7 98 69.4
Ciclev10028484m.g Citrus clementina HOM05D000626 ORTHO05D003868 3.2e-31 138.3 98 68.4
CsaV3_2G014400 Cucumis sativus L. HOM05D000626 ORTHO05D003868 3.2e-31 138.3 98 68.4
Glyma.11G120300 Glycine max HOM05D000626 ORTHO05D003868 3.2e-31 138.3 74 90.5
Lj3g0026150 Lotus japonicus HOM05D000626 ORTHO05D003868 3.2e-31 138.3 98 69.4
Lalb_Chr03g0025801 Lupinus albus HOM05D000626 ORTHO05D003868 3.2e-31 138.3 98 69.4
Phvul.011G047300 Phaseolus vulgaris HOM05D000626 ORTHO05D003868 3.2e-31 138.3 98 70.4
Sed0005165 Sechium edule HOM05D000626 ORTHO05D003868 4.2e-31 137.9 98 69.4
Atru.chr5.2949 Acer truncatum HOM05D000626 ORTHO05D003868 5.5e-31 137.5 98 68.4
Prupe.8G102600 Prunus persica HOM05D000626 ORTHO05D003868 5.5e-31 137.5 74 89.2
Haze_02415 Corylus avellana HOM05D000626 ORTHO05D003868 7.2e-31 137.1 74 89.2
Eucgr.G01893 Eucalyptus grandis HOM05D000626 ORTHO05D003868 7.2e-31 137.1 77 83.1
Glyma.12G045400 Glycine max HOM05D000626 ORTHO05D003868 7.2e-31 137.1 98 69.4
Sed0006655 Sechium edule HOM05D000626 ORTHO05D003868 7.2e-31 137.1 98 68.4
MD10G1081300 Malus domestica HOM05D000626 ORTHO05D003868 1.6e-30 136.0 98 67.3
TPR.G28529 Trifolium pratense HOM05D000626 ORTHO05D003868 1.6e-30 136.0 78 83.3
TWI31G0747 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.6e-30 136.0 98 68.4
Ca_20850_v3 Cicer arietinum L. HOM05D000626 ORTHO05D003868 2.1e-30 135.6 98 66.3
Lalb_Chr01g0002691 Lupinus albus HOM05D000626 ORTHO05D003868 2.1e-30 135.6 98 68.4
PGR042G1683 Punica granatum HOM05D000626 ORTHO05D003868 2.1e-30 135.6 77 81.8
ECA232G3839 Erigeron canadensis HOM05D000626 ORTHO05D003868 2.7e-30 135.2 97 67.0
BcaB02g10001 Brassica carinata HOM05D000626 ORTHO05D003868 4.7e-30 134.4 98 66.3
BcaB04g20111 Brassica carinata HOM05D000626 ORTHO05D003868 4.7e-30 134.4 98 66.3
BcaB07g29659 Brassica carinata HOM05D000626 ORTHO05D003868 4.7e-30 134.4 98 66.3
BcaC04g23148 Brassica carinata HOM05D000626 ORTHO05D003868 4.7e-30 134.4 98 66.3
C09p11660 Brassica napus HOM05D000626 ORTHO05D003868 4.7e-30 134.4 98 66.3
BolC9t54060H Brassica oleracea HOM05D000626 ORTHO05D003868 4.7e-30 134.4 98 66.3
BraA09t36632Z Brassica rapa HOM05D000626 ORTHO05D003868 4.7e-30 134.4 98 66.3
AT5G66680 Arabidopsis thaliana HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
arahy.Tifrunner.gnm1.ann1.GNS53T Arachis hypogaea HOM05D000626 ORTHO05D003868 6.1e-30 134.0 74 86.5
arahy.Tifrunner.gnm1.ann1.NL7PFA Arachis hypogaea HOM05D000626 ORTHO05D003868 6.1e-30 134.0 74 86.5
BcaC06g34731 Brassica carinata HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
A07p17280 Brassica napus HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
C07p25140 Brassica napus HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
BraA07t29454Z Brassica rapa HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
Carub.0008s2782 Capsella rubella HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
CARHR281040 Cardamine hirsuta HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
Cpa.g.sc62.112 Carica papaya HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 83.1
Thhalv10004242m.g Eutrema salsugineum HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
Sp2g30020 Schrenkiella parvula HOM05D000626 ORTHO05D003868 6.1e-30 134.0 77 81.8
Aa31LG1G15220 Aethionema arabicum HOM05D000626 ORTHO05D003868 7.9e-30 133.7 98 65.3
QL11p042537 Quercus lobata HOM05D000626 ORTHO05D003868 7.9e-30 133.7 73 84.9
THA.LOC104826869 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 7.9e-30 133.7 77 83.1
A09p09850 Brassica napus HOM05D000626 ORTHO05D003868 1.4e-29 132.9 98 66.3
AL8G44800 Arabidopsis lyrata HOM05D000626 ORTHO05D003868 1.8e-29 132.5 77 80.5
EL10Ac9g21756 Beta vulgaris HOM05D000626 ORTHO05D003868 1.8e-29 132.5 98 67.3
Medtr4g069240 Medicago truncatula HOM05D000626 ORTHO05D003868 1.8e-29 132.5 98 65.3
Psat7g141000 Pisum sativum HOM05D000626 ORTHO05D003868 2.3e-29 132.1 74 83.8
Aqoxy6G01025 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 3.0e-29 131.7 74 82.4
MD05G1070400 Malus domestica HOM05D000626 ORTHO05D003868 3.0e-29 131.7 98 64.3
Hund06221 Selenicereus undatus HOM05D000626 ORTHO05D003868 3.0e-29 131.7 77 81.8
HanXRQChr15g0487501 Helianthus annuus HOM05D000626 ORTHO05D003868 3.9e-29 131.3 77 80.5
PSO541G5997 Papaver somniferum HOM05D000626 ORTHO05D003868 3.9e-29 131.3 72 86.1
PSO675G2926 Papaver somniferum HOM05D000626 ORTHO05D003868 3.9e-29 131.3 72 86.1
Sc18g0004660 Simmondsia chinensis HOM05D000626 ORTHO05D003868 3.9e-29 131.3 98 64.3
TAR376G0372 Trochodendron aralioides HOM05D000626 ORTHO05D003868 3.9e-29 131.3 77 81.8
Manes.15G148600 Manihot esculenta HOM05D000626 ORTHO05D003868 5.1e-29 131.0 77 80.5
THA.LOC104819216 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 5.1e-29 131.0 77 79.2
Lsat_1_v5_gn_4_144441 Lactuca sativa HOM05D000626 ORTHO05D003868 6.7e-29 130.6 73 83.6
Manes.13G136200 Manihot esculenta HOM05D000626 ORTHO05D003868 6.7e-29 130.6 77 80.5
Nn5g29507 Nelumbo nucifera HOM05D000626 ORTHO05D003868 8.8e-29 130.2 98 65.3
Oeu032561.1 Olea europaea HOM05D000626 ORTHO05D003868 8.8e-29 130.2 77 79.2
DCAR_017221 Daucus carota HOM05D000626 ORTHO05D003868 1.5e-28 129.4 77 77.9
Oeu035116.1 Olea europaea HOM05D000626 ORTHO05D003868 1.5e-28 129.4 98 64.3
RcHm_v2.0_Chr6g0262991 Rosa chinensis HOM05D000626 ORTHO05D003868 2.0e-28 129.0 98 62.2
Atru.chr3.513 Acer truncatum HOM05D000626 ORTHO05D003868 2.6e-28 128.6 77 77.9
MSTRG.16792 Avicennia marina HOM05D000626 ORTHO05D003868 2.6e-28 128.6 98 64.3
FAN15G2364 Fragaria x ananassa HOM05D000626 ORTHO05D003868 2.6e-28 128.6 98 61.2
HPP92_010187 Vanilla planifolia HOM05D000626 ORTHO05D003868 2.6e-28 128.6 74 82.4
CSS0014885 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 3.3e-28 128.3 98 63.3
FvH4_2g08200 Fragaria vesca HOM05D000626 ORTHO05D003868 3.3e-28 128.3 98 61.2
FAN20G2380 Fragaria x ananassa HOM05D000626 ORTHO05D003868 3.3e-28 128.3 98 61.2
FAN24G1839 Fragaria x ananassa HOM05D000626 ORTHO05D003868 3.3e-28 128.3 98 61.2
Dinv23553 Davidia involucrata HOM05D000626 ORTHO05D003868 4.4e-28 127.9 74 82.4
vmacro02136 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 4.4e-28 127.9 74 79.7
CDE02G0645 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 5.7e-28 127.5 90 68.9
Cc07_g09070 Coffea canephora HOM05D000626 ORTHO05D003868 5.7e-28 127.5 98 63.3
unitig_37.g12815 Utricularia gibba HOM05D000626 ORTHO05D003868 5.7e-28 127.5 98 60.2
Actinidia36541 Actinidia chinensis HOM05D000626 ORTHO05D003868 7.4e-28 127.1 76 76.3
Manes.12G098300 Manihot esculenta HOM05D000626 ORTHO05D003868 7.4e-28 127.1 77 76.6
Potri.005G127000 Populus trichocarpa HOM05D000626 ORTHO05D003868 7.4e-28 127.1 77 77.9
AUR62011357 Chenopodium quinoa HOM05D000626 ORTHO05D003868 9.7e-28 126.7 77 77.9
Cc02_g17860 Coffea canephora HOM05D000626 ORTHO05D003868 9.7e-28 126.7 74 79.7
COL.COLO4_22139 Corchorus olitorius HOM05D000626 ORTHO05D003868 9.7e-28 126.7 77 76.6
SGA_v2.0_scaffold33G13424 Striga asiatica HOM05D000626 ORTHO05D003868 9.7e-28 126.7 98 63.3
Actinidia00502 Actinidia chinensis HOM05D000626 ORTHO05D003868 1.3e-27 126.3 73 79.5
CDE01G0575 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 1.3e-27 126.3 98 61.2
FAN27G0454 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.3e-27 126.3 98 60.2
Nitab4.5_0022318g0010 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.3e-27 126.3 98 63.3
EL10Ac6g14893 Beta vulgaris HOM05D000626 ORTHO05D003868 1.7e-27 125.9 77 75.3
Hma1.2p1_0066F.1_g036710 Hydrangea macrophylla HOM05D000626 ORTHO05D003868 1.7e-27 125.9 74 79.7
Actinidia25417 Actinidia chinensis HOM05D000626 ORTHO05D003868 2.8e-27 125.2 77 75.3
ATR0733G160 Amborella trichopoda HOM05D000626 ORTHO05D003868 2.8e-27 125.2 77 75.3
TWI53G0930 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 2.8e-27 125.2 77 75.3
GSVIVG01019024001 Vitis vinifera HOM05D000626 ORTHO05D003868 2.8e-27 125.2 98 63.3
GSVIVG01031917001 Vitis vinifera HOM05D000626 ORTHO05D003868 2.8e-27 125.2 98 61.2
MSTRG.23557 Avicennia marina HOM05D000626 ORTHO05D003868 3.7e-27 124.8 98 60.2
Potri.007G031000 Populus trichocarpa HOM05D000626 ORTHO05D003868 3.7e-27 124.8 77 76.6
Dinv39947 Davidia involucrata HOM05D000626 ORTHO05D003868 4.8e-27 124.4 76 77.6
Nitab4.5_0008989g0040 Nicotiana tabacum HOM05D000626 ORTHO05D003868 4.8e-27 124.4 77 75.3
Peaxi162Scf00684g00567 Petunia axillaris HOM05D000626 ORTHO05D003868 4.8e-27 124.4 98 62.2
SGA_v2.0_scaffold276G46656 Striga asiatica HOM05D000626 ORTHO05D003868 6.3e-27 124.0 98 61.2
TWI09G1554 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 6.3e-27 124.0 77 75.3
Sabra07G0026800 Salix brachista HOM05D000626 ORTHO05D003868 8.2e-27 123.6 77 75.3
MD15G1269000 Malus domestica HOM05D000626 ORTHO05D003868 1.1e-26 123.2 78 73.1
Peaxi162Scf00016g00944 Petunia axillaris HOM05D000626 ORTHO05D003868 1.1e-26 123.2 77 74.0
Nitab4.5_0000199g0010 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.4e-26 122.9 77 75.3
Prupe.7G148700 Prunus persica HOM05D000626 ORTHO05D003868 2.4e-26 122.1 77 75.3
Thecc.01G041600 Theobroma cacao HOM05D000626 ORTHO05D003868 2.4e-26 122.1 77 74.0
Mapoly0103s0006 Marchantia polymorpha HOM05D000626 ORTHO05D003868 3.1e-26 121.7 77 75.3
CAN.G322.113 Capsicum annuum HOM05D000626 ORTHO05D003868 4.1e-26 121.3 77 75.3
Solyc01g109410.4 Solanum lycopersicum HOM05D000626 ORTHO05D003868 5.3e-26 120.9 77 74.0
Sopen01g051600 Solanum pennellii HOM05D000626 ORTHO05D003868 5.3e-26 120.9 77 74.0
Aqoxy5G01696 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 7.0e-26 120.6 77 70.1
AUR62008017 Chenopodium quinoa HOM05D000626 ORTHO05D003868 7.0e-26 120.6 77 71.4
Zm00001eb303200 Zea mays HOM05D000626 ORTHO05D003868 7.0e-26 120.6 98 59.2
Ah.03g139660 Amaranthus hybridus HOM05D000626 ORTHO05D003868 1.2e-25 119.8 77 71.4
CANSAT01G0918 Cannabis sativa HOM05D000626 ORTHO05D003868 1.2e-25 119.8 75 72.0
Duzib264G0072 Durio zibethinus HOM05D000626 ORTHO05D003868 1.2e-25 119.8 77 71.4
Dinv26800 Davidia involucrata HOM05D000626 ORTHO05D003868 1.5e-25 119.4 76 73.7
AUR62003200 Chenopodium quinoa HOM05D000626 ORTHO05D003868 2.0e-25 119.0 77 70.1
Zm00001eb095330 Zea mays HOM05D000626 ORTHO05D003868 2.0e-25 119.0 98 60.2
AagrBONN_evm.TU.Sc2ySwM_117.2383 Anthoceros agrestis HOM05D000626 ORTHO05D003868 2.6e-25 118.6 98 59.2
SalBow5G3169 Salvia bowleyana HOM05D000626 ORTHO05D003868 4.5e-25 117.9 114 54.4
SMO358G0537 Selaginella moellendorffii HOM05D000626 ORTHO05D003868 4.5e-25 117.9 78 70.5
Hund14135 Selenicereus undatus HOM05D000626 ORTHO05D003868 4.5e-25 117.9 77 70.1
Cpa.g.sc158.17 Carica papaya HOM05D000626 ORTHO05D003868 5.9e-25 117.5 77 70.1
BolC7t43044H Brassica oleracea HOM05D000626 ORTHO05D003868 1.9e-23 112.5 75 74.7
Pp3c24_6930 Physcomitrium patens HOM05D000626 ORTHO05D003868 5.5e-23 110.9 72 70.8
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 2.7e-22 108.6 90 61.1
SalBow6G3366 Salvia bowleyana HOM05D000626 ORTHO05D003868 2.7e-22 108.6 61 82.0
SGA_v2.0_scaffold58G20567 Striga asiatica HOM05D000626 ORTHO05D003868 3.6e-22 108.2 61 82.0
Nitab4.5_0001794g0020 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.4e-21 106.3 62 77.4
CBR_g28880 Chara braunii HOM05D000626 ORTHO05D003868 1.8e-21 105.9 98 52.0
Lj5C200G5 Lonicera japonica HOM05D000626 ORTHO05D003868 6.7e-21 104.0 61 77.0
CSS0006874 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 8.8e-21 103.6 55 85.5
BraA02t09362Z Brassica rapa HOM05D000626 ORTHO05D003868 3.3e-20 101.7 75 66.7
Cre14.g614100 Chlamydomonas reinhardtii HOM05D000626 ORTHO05D003868 1.3e-19 99.8 91 50.5
MELO3C021946.2 Cucumis melo HOM05D000626 ORTHO05D003868 1.1e-15 86.7 51 78.4
BcaC03g18407 Brassica carinata HOM05D000626 ORTHO05D003868 6.8e-13 77.4 44 79.5
AUR62016705 Chenopodium quinoa HOM05D000626 ORTHO05D003868 1.1e-10 70.1 77 51.9
A02p44450 Brassica napus HOM05D000626 ORTHO05D003868 3.5e-09 65.1 77 49.4
Lj2C447T14 Lonicera japonica HOM05D000626 ORTHO05D003868 3.5e-09 65.1 72 52.8
Gorai.013G052700 Gossypium raimondii HOM05D000626 ORTHO05D003868 7.7e-09 63.9 77 46.8
arahy.Tifrunner.gnm1.ann1.61JD7D Arachis hypogaea HOM05D000626 ORTHO05D003868 1.7e-08 62.8 34 85.3
arahy.Tifrunner.gnm1.ann1.FT0TL2 Arachis hypogaea HOM05D000626 ORTHO05D003868 1.7e-08 62.8 33 87.9
Lj4C195G12 Lonicera japonica HOM05D000626 ORTHO05D003868 1.7e-08 62.8 77 46.8
arahy.Tifrunner.gnm1.ann1.ZIS5WG Arachis hypogaea HOM05D000626 ORTHO05D003868 3.8e-08 61.6 33 84.8
arahy.Tifrunner.gnm1.ann1.4Z2V5Y Arachis hypogaea HOM05D000626 ORTHO05D003868 5.0e-08 61.2 33 84.8
Migut.H00194 Erythranthe guttata HOM05D000626 ORTHO05D003868 5.0e-08 61.2 55 50.9
Gohir.A07G207250 Gossypium hirsutum HOM05D000626 ORTHO05D003868 5.0e-08 61.2 34 82.4
arahy.Tifrunner.gnm1.ann1.9EQ5HC Arachis hypogaea HOM05D000626 ORTHO05D003868 8.5e-08 60.5 31 90.3
TAR628G0085 Trochodendron aralioides HOM05D000626 ORTHO05D003868 1.1e-07 60.1 33 81.8
Potri.004G151050 Populus trichocarpa HOM05D000626 ORTHO05D003868 1.5e-07 59.7 69 52.2
FvH4_4g13600 Fragaria vesca HOM05D000626 ORTHO05D003868 2.1e-06 55.8 56 44.6
FAN09G2415 Fragaria x ananassa HOM05D000626 ORTHO05D003868 2.7e-06 55.5 56 42.9
CAN.G529.47 Capsicum annuum HOM05D000043 ORTHO05D000600 4.7e-06 54.7 35 71.4
CAN.G204.14 Capsicum annuum HOM05D000626 ORTHO05D015997 6.1e-06 54.3 33 75.8
FvH4_6g12900 Fragaria vesca HOM05D000626 ORTHO05D003868 6.1e-06 54.3 56 42.9
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 6.1e-06 54.3 47 63.8


User provided reference genes

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