Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.1e-36 155.2 79 100.0
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 2.3e-27 125.2 75 85.3
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.1e-26 122.9 75 84.0
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 1.1e-26 122.9 75 84.0
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.2e-23 112.8 73 79.5
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 9.9e-23 109.8 71 77.5
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 2.9e-22 108.2 69 81.2
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 8.4e-22 106.7 65 83.1
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 8.4e-22 106.7 73 74.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 2.4e-21 105.1 66 81.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 2.4e-21 105.1 73 75.3
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 2.4e-21 105.1 73 71.2
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.2e-21 104.8 64 81.2
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.2e-21 104.8 74 71.6
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 4.2e-21 104.4 73 71.2
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 4.2e-21 104.4 68 76.5
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 5.4e-21 104.0 65 80.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 7.1e-21 103.6 65 80.0
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.2e-20 102.8 73 71.2
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 2.1e-20 102.1 64 81.2
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 3.5e-20 101.3 65 80.0
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 6.0e-20 100.5 66 75.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 7.8e-20 100.1 68 76.5
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 7.8e-20 100.1 68 76.5
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 7.8e-20 100.1 68 76.5
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.0e-19 99.8 68 76.5
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 1.3e-19 99.4 69 73.9
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.3e-19 99.4 69 73.9
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.3e-19 99.4 71 74.6
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 1.7e-19 99.0 75 69.3
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 3.9e-19 97.8 74 68.9
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 5.1e-19 97.4 66 72.7
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 6.6e-19 97.1 71 66.2
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 6.6e-19 97.1 75 62.7
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 8.7e-19 96.7 69 72.5
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 1.5e-18 95.9 75 62.7
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.9e-18 95.5 73 64.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 2.5e-18 95.1 71 66.2
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 2.5e-18 95.1 65 73.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 2.5e-18 95.1 65 70.8
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.3e-18 94.7 69 71.0
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 3.3e-18 94.7 69 71.0
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 3.3e-18 94.7 69 71.0
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 3.3e-18 94.7 69 71.0
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 4.3e-18 94.4 70 67.1
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 4.3e-18 94.4 73 65.8
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 4.3e-18 94.4 69 66.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 5.6e-18 94.0 64 71.9
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 5.6e-18 94.0 64 71.9
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 7.3e-18 93.6 69 69.6
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 9.6e-18 93.2 74 62.2
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 1.3e-17 92.8 65 69.2
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 1.3e-17 92.8 64 71.9
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 1.6e-17 92.4 68 66.2
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 2.1e-17 92.0 69 69.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 2.1e-17 92.0 73 63.0
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 2.8e-17 91.7 73 65.8
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 3.6e-17 91.3 65 67.7
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 3.6e-17 91.3 67 67.2
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 3.6e-17 91.3 67 67.2
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 3.6e-17 91.3 65 72.3
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 3.6e-17 91.3 73 64.4
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 4.8e-17 90.9 69 68.1
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 4.8e-17 90.9 72 61.1
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 4.8e-17 90.9 65 70.8
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 6.2e-17 90.5 69 65.2
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 6.2e-17 90.5 68 69.1
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 8.1e-17 90.1 75 58.7
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 8.1e-17 90.1 71 66.2
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.1e-16 89.7 62 71.0
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 1.4e-16 89.4 75 58.7
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 1.4e-16 89.4 64 70.3
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 1.8e-16 89.0 71 62.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 1.8e-16 89.0 75 61.3
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 3.1e-16 88.2 71 64.8
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 4.0e-16 87.8 71 57.7
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 4.0e-16 87.8 71 62.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 5.3e-16 87.4 64 67.2
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 5.3e-16 87.4 65 69.2
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 5.3e-16 87.4 65 69.2
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.5e-15 85.9 73 57.5
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 2.6e-15 85.1 64 65.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 3.4e-15 84.7 64 68.8
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.7e-14 82.4 62 62.9
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 2.9e-14 81.6 71 56.3
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 3.8e-14 81.3 57 68.4
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 4.9e-14 80.9 65 61.5
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.4e-13 79.3 62 62.9
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 2.4e-13 78.6 57 64.9
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 5.4e-13 77.4 61 60.7
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 5.4e-13 77.4 60 66.7
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.2e-12 76.3 66 62.1
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 2.7e-12 75.1 56 62.5
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 3.5e-12 74.7 64 62.5
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 5.1e-11 70.9 62 61.3
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.4e-10 67.0 85 45.9
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.4e-10 67.0 85 45.9
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.8e-09 65.1 85 44.7
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 4.9e-06 54.3 69 44.9


User provided reference genes

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