Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 9.7e-256 886.3 455 100.0
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 5.0e-228 794.3 455 89.9
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.8e-217 759.2 455 84.0
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.3e-217 758.8 455 84.0
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.3e-204 715.7 455 80.2
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 5.2e-201 704.5 463 76.2
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.2e-200 703.4 458 77.7
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.6e-200 702.2 456 78.1
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.6e-197 693.0 450 78.2
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.9e-196 688.3 448 77.7
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.9e-195 686.0 455 76.9
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.6e-195 684.5 448 77.2
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 5.6e-195 684.5 448 77.5
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.6e-194 682.9 481 74.0
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.6e-194 682.9 481 74.0
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.1e-194 682.6 456 76.1
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 2.4e-193 679.1 454 76.4
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 4.0e-193 678.3 448 75.9
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.6e-192 675.6 448 76.1
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.9e-191 672.2 447 76.3
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 6.4e-191 671.0 448 76.6
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.9e-190 669.5 450 74.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.2e-190 668.3 448 75.7
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.1e-189 666.0 458 72.9
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.7e-189 665.6 453 76.6
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 4.6e-189 664.8 454 74.2
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 4.6e-189 664.8 448 75.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.6e-189 664.8 448 75.4
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 4.6e-189 664.8 455 73.8
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.3e-188 663.3 447 75.2
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-188 662.5 449 75.1
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.9e-188 661.8 449 75.3
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.9e-188 661.8 449 75.3
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.9e-188 661.8 448 74.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.1e-187 660.2 449 74.8
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-187 659.1 449 74.8
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.5e-187 659.1 447 75.2
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 7.3e-187 657.5 448 74.8
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.3e-186 656.8 449 74.8
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.3e-186 656.8 456 73.0
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 1.6e-186 656.4 458 74.0
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.1e-186 656.0 454 73.6
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 3.6e-186 655.2 391 83.6
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.6e-186 655.2 449 73.7
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 4.8e-186 654.8 447 74.3
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.1e-185 653.7 448 74.1
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.1e-185 652.1 448 73.4
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 3.1e-185 652.1 448 73.9
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 4.0e-185 651.7 453 72.2
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 6.9e-185 651.0 458 73.8
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 6.9e-185 651.0 399 82.5
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.8e-184 647.9 448 74.1
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 9.9e-184 647.1 448 73.4
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.9e-183 645.6 460 73.3
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.9e-183 645.6 459 73.6
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 8.4e-183 644.0 459 72.8
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 8.4e-183 644.0 464 70.5
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.1e-182 643.7 447 72.5
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.9e-182 642.9 449 73.1
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.2e-181 640.2 449 73.1
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.7e-181 639.0 460 72.4
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 3.5e-181 638.6 457 72.2
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.6e-181 638.3 460 72.8
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.0e-180 637.1 454 70.7
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.0e-180 637.1 454 70.7
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.8e-180 636.3 458 72.1
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.3e-180 636.0 448 72.1
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.0e-180 635.6 472 70.3
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 3.0e-180 635.6 419 75.4
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 5.1e-180 634.8 455 71.6
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 6.7e-180 634.4 460 72.2
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 8.7e-180 634.0 449 72.2
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 8.7e-180 634.0 449 72.2
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.5e-179 633.3 448 71.4
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.5e-179 633.3 461 72.0
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.5e-179 633.3 446 71.1
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-179 632.5 476 68.9
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.5e-179 632.5 446 71.5
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.3e-179 632.1 453 72.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 7.4e-179 630.9 500 66.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.6e-178 629.8 455 69.7
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.6e-178 629.8 455 69.7
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 4.8e-178 628.2 458 70.3
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 6.2e-178 627.9 454 70.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 3.1e-177 625.5 456 70.4
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.9e-177 624.4 455 68.4
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 6.9e-177 624.4 475 67.6
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.5e-176 623.2 454 71.8
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 9.9e-176 620.5 470 69.6
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.7e-175 619.8 454 70.0
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.9e-175 619.0 442 70.4
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 3.8e-175 618.6 450 70.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.6e-173 611.7 416 76.0
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 6.0e-173 611.3 468 67.7
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 4.3e-171 605.1 451 66.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.4e-171 604.4 446 70.0
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.0e-169 598.6 454 67.8
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.3e-167 593.6 448 67.4
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 3.8e-167 592.0 451 68.1
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 6.5e-167 591.3 460 65.2
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.1e-166 590.5 444 68.0
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.2e-165 587.0 401 76.1
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.5e-163 579.3 547 55.8
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.1e-161 573.9 453 64.7
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 3.4e-160 568.9 444 65.3
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 4.6e-157 558.5 469 62.7
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.5e-155 553.5 388 70.1
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 2.0e-152 543.1 390 70.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.4e-150 537.0 478 59.4
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.3e-147 525.8 429 61.3
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 5.3e-145 518.5 445 60.9
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.2e-144 517.3 404 66.1
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.9e-140 502.3 446 58.1
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.4e-139 498.8 349 73.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 7.4e-139 498.0 383 66.1
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 3.5e-136 489.2 446 57.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.5e-134 483.8 446 55.4
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 8.0e-133 478.0 446 56.3
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.8e-130 469.5 443 60.3
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.7e-128 463.0 285 79.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 5.0e-127 458.8 453 57.0
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.5e-126 456.4 440 54.1
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.1e-125 453.4 316 74.7
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 6.3e-122 441.8 393 57.0
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 8.3e-122 441.4 454 49.6
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 4.1e-121 439.1 454 49.3
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.4e-121 438.7 454 49.1
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 9.1e-121 438.0 429 51.3
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 3.3e-118 429.5 450 49.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.9e-102 377.1 453 46.6
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 9.5e-102 374.8 290 68.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.4e-97 360.1 262 70.6
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.6e-96 357.5 398 50.3
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.3e-94 349.7 252 70.2
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.2e-83 314.7 453 40.8
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 8.4e-82 308.5 313 57.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 9.9e-75 285.0 458 41.3
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 6.6e-71 272.3 193 68.4
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.3e-61 241.5 174 70.1
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 6.9e-60 235.7 158 75.3
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.1e-54 218.4 129 77.5
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 9.3e-49 198.7 158 64.6
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.8e-45 187.2 125 70.4
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 8.2e-45 185.7 192 50.5
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.1e-41 175.3 121 71.9
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.1e-36 156.8 133 61.7
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.6e-32 143.7 116 64.7
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.0e-30 137.9 94 72.3
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 3.1e-28 130.6 112 62.5
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 4.7e-24 116.7 77 72.7
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.8e-21 107.5 72 72.2
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.8e-20 104.8 99 50.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.9e-17 94.7 61 78.7
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 2.0e-14 84.7 57 71.9
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 3.1e-12 77.4 58 69.0
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 7.7e-11 72.8 75 56.0
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.9e-10 70.9 48 70.8
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 5.7e-06 56.6 37 78.4


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