Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 0.0e+00 1100.5 566 100.0
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 1.0e-278 963.0 568 85.9
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 3.4e-274 948.0 568 85.7
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 9.8e-274 946.4 569 85.2
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 5.4e-272 940.6 570 84.9
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.1e-261 906.4 520 86.5
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 4.7e-260 901.0 569 82.4
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 1.1e-227 793.5 611 70.4
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 4.1e-227 791.6 594 72.4
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 5.8e-226 787.7 589 72.7
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.2e-224 781.9 533 76.9
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 5.5e-224 781.2 515 77.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.2e-223 780.0 614 68.7
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.6e-223 779.6 596 71.1
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.5e-223 778.5 600 71.2
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 6.7e-222 774.2 554 75.1
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 8.2e-220 767.3 450 85.3
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 2.4e-219 765.8 415 90.4
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.5e-218 763.1 601 70.9
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 2.9e-217 758.8 566 72.3
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 5.0e-217 758.1 590 69.7
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.1e-216 756.9 603 67.8
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 7.2e-216 754.2 417 88.0
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 3.0e-214 748.8 413 88.6
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 2.8e-212 742.3 439 85.0
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 8.2e-212 740.7 596 66.3
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.8e-211 739.6 587 67.3
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 6.9e-211 737.6 597 66.2
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.6e-210 735.7 444 82.9
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 2.6e-210 735.7 508 74.8
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 3.4e-210 735.3 556 71.0
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 4.5e-210 734.9 603 66.7
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 7.7e-210 734.2 592 67.6
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 6.5e-209 731.1 582 66.8
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 6.5e-209 731.1 487 77.0
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 8.5e-209 730.7 593 68.3
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.1e-208 730.3 594 68.0
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.9e-208 729.6 450 81.1
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.9e-208 729.6 431 83.8
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 3.2e-208 728.8 580 66.9
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 3.2e-208 728.8 582 67.2
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 3.2e-208 728.8 584 67.1
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 4.2e-208 728.4 450 81.3
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 4.2e-208 728.4 577 66.6
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 7.2e-208 727.6 447 81.9
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 9.4e-208 727.2 442 81.2
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 1.2e-207 726.9 441 81.9
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 1.2e-207 726.9 596 66.1
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 2.1e-207 726.1 590 67.1
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 3.6e-207 725.3 574 68.1
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 6.1e-207 724.5 592 66.6
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.4e-206 723.4 584 67.6
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.4e-206 723.4 443 81.5
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.3e-206 722.6 486 76.1
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 3.0e-206 722.2 483 76.8
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.9e-206 721.8 613 64.8
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 3.9e-206 721.8 575 68.7
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.8e-206 720.7 598 65.9
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.1e-205 720.3 443 81.9
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.1e-205 720.3 580 66.7
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.5e-205 719.9 409 85.6
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.0e-205 719.5 602 65.8
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 9.7e-205 717.2 464 79.7
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.8e-204 715.7 596 64.9
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 3.7e-204 715.3 417 83.7
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 6.3e-204 714.5 428 83.6
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 8.2e-204 714.1 478 75.9
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.4e-203 713.4 593 66.8
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.3e-203 711.4 547 70.4
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.2e-202 710.3 439 79.5
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.2e-202 710.3 409 85.1
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.2e-202 710.3 409 85.1
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-202 710.3 502 72.1
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 5.9e-202 708.0 587 66.4
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 2.2e-201 706.1 450 79.1
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 5.0e-201 704.9 585 65.8
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 8.5e-201 704.1 472 75.0
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.1e-200 703.7 585 66.5
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.5e-200 703.4 450 78.2
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.5e-200 703.4 598 65.2
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.5e-200 703.4 580 65.9
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.5e-200 702.6 444 79.3
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 2.5e-200 702.6 444 79.1
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.5e-200 702.6 457 77.2
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 3.2e-200 702.2 595 64.5
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 4.2e-200 701.8 585 66.0
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 5.5e-200 701.4 586 66.4
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 7.2e-200 701.0 459 76.9
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 7.2e-200 701.0 413 83.3
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 9.4e-200 700.7 429 80.2
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.2e-199 700.3 588 66.8
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 4.7e-199 698.4 414 83.1
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 8.0e-199 697.6 505 71.7
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.4e-198 696.8 580 64.1
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 2.3e-198 696.0 497 72.2
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.3e-198 696.0 444 78.6
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.3e-198 696.0 430 79.8
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 6.7e-198 694.5 497 72.2
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.1e-197 693.7 513 70.2
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.5e-197 693.3 509 70.1
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 2.6e-197 692.6 498 72.1
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.3e-196 690.3 573 65.1
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.8e-196 689.1 605 63.5
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 2.8e-196 689.1 451 75.8
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 8.2e-196 687.6 498 72.1
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 3.1e-195 685.6 587 64.2
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 9.1e-195 684.1 439 77.7
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.5e-194 682.2 436 77.8
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 1.3e-193 680.2 411 80.8
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.1e-192 677.2 594 63.3
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.1e-192 677.2 494 71.1
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-192 677.2 494 71.1
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.1e-192 677.2 494 71.1
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.1e-192 677.2 451 74.9
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.1e-192 677.2 535 68.6
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 1.5e-192 676.8 458 74.9
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.9e-192 676.4 453 74.4
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.2e-192 675.6 412 79.1
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 5.5e-192 674.9 447 76.1
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 9.4e-192 674.1 565 65.5
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 9.4e-192 674.1 565 65.5
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 9.4e-192 674.1 416 82.7
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.6e-191 673.3 407 81.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 2.7e-191 672.5 580 63.8
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 5.2e-190 668.3 414 80.0
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 6.8e-190 667.9 466 72.1
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 5.7e-189 664.8 433 76.7
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 6.5e-185 651.4 413 78.5
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 7.2e-184 647.9 401 79.8
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 2.7e-183 646.0 491 67.2
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 4.0e-182 642.1 544 65.4
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.1e-179 632.5 362 85.4
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 5.4e-179 631.7 582 61.3
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 1.0e-174 617.5 368 84.5
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.0e-169 600.9 411 71.8
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 4.6e-162 575.5 375 78.1
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.3e-153 547.4 421 65.8
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.9e-147 526.9 356 71.1
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.2e-146 524.2 432 62.5
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.3e-145 520.0 376 71.3
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 5.6e-144 515.4 406 65.0
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.8e-133 478.8 304 74.0
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 8.4e-132 474.9 349 67.6
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 2.8e-103 380.2 209 85.2
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 3.0e-97 360.1 197 85.3
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.1e-96 358.2 385 49.9
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.8e-92 343.2 380 54.2
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 3.7e-87 326.6 180 84.4
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 7.5e-80 302.4 159 87.4
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.7e-79 301.2 156 89.1
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.7e-79 301.2 156 89.1
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 1.1e-75 288.5 253 60.5
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.8e-73 279.3 460 40.9
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 3.7e-63 246.9 363 38.6
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.6e-60 236.1 182 69.8
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 6.6e-52 209.5 182 54.9
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.1e-50 204.5 151 74.8
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 1.3e-47 195.3 187 56.1
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.1e-46 190.3 265 37.7
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 1.2e-45 188.7 109 83.5
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 1.0e-36 159.1 99 75.8
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 1.3e-36 158.7 156 55.1
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.5e-35 155.2 88 80.7
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.1e-34 151.4 110 65.5
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 4.0e-33 147.1 83 79.5
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 8.9e-33 146.0 128 58.6
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.3e-31 142.1 210 37.1
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 4.9e-31 140.2 83 74.7
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 2.2e-23 114.8 114 54.4
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 4.9e-23 113.6 98 60.2
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 8.7e-20 102.8 167 40.7
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 1.9e-14 85.1 82 58.5
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 7.1e-14 83.2 175 33.7
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 1.3e-12 79.0 111 43.2
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 1.8e-12 78.6 41 92.7
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 7.4e-11 73.2 57 68.4
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 2.9e-07 61.2 32 84.4


User provided reference genes

Program Settings