Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G181700 Theobroma cacao HOM05D007935 ORTHO05D007393 2.6e-95 352.1 177 100.0
Duzib177G0305 Durio zibethinus HOM05D007935 ORTHO05D007393 6.6e-59 231.1 159 78.6
COL.COLO4_16292 Corchorus olitorius HOM05D007935 ORTHO05D007393 3.0e-43 179.1 161 67.1
Gohir.A09G117400 Gossypium hirsutum HOM05D007935 ORTHO05D007393 3.6e-41 172.2 169 63.3
Gohir.D09G114200 Gossypium hirsutum HOM05D007935 ORTHO05D007393 8.1e-41 171.0 169 63.9
Gorai.006G131900 Gossypium raimondii HOM05D007935 ORTHO05D007393 1.8e-40 169.9 169 63.9
Potri.013G114000 Populus trichocarpa HOM05D007935 ORTHO05D007393 1.2e-31 140.6 172 48.8
Sabra13G0096500 Salix brachista HOM05D007935 ORTHO05D007393 7.1e-29 131.3 174 46.6
Cpa.g.sc66.51 Carica papaya HOM05D007935 ORTHO05D007393 6.0e-28 128.3 169 50.9
Cfa018195 Carpinus fangiana HOM05D007935 ORTHO05D007393 6.0e-28 128.3 165 50.9
QL02p034017 Quercus lobata HOM05D007935 ORTHO05D007393 1.3e-27 127.1 164 45.7
Potri.019G084500 Populus trichocarpa HOM05D007935 ORTHO05D007393 1.9e-26 123.2 171 44.4
Sabra19G0095700 Salix brachista HOM05D007935 ORTHO05D007393 8.1e-25 117.9 161 44.1
Haze_17920 Corylus avellana HOM05D007935 ORTHO05D007393 1.4e-24 117.1 155 49.0
Manes.02G191100 Manihot esculenta HOM05D007935 ORTHO05D007393 1.4e-24 117.1 177 46.3
Glyma.02G074300 Glycine max HOM05D007935 ORTHO05D007393 1.2e-23 114.0 159 44.0
Phvul.004G084000 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 3.4e-23 112.5 159 45.9
Glyma.16G156000 Glycine max HOM05D007935 ORTHO05D007393 1.7e-22 110.2 158 44.3
Prupe.8G056300 Prunus persica HOM05D007935 ORTHO05D007393 2.9e-22 109.4 165 42.4
TAR628G0171 Trochodendron aralioides HOM05D007935 ORTHO05D007393 6.5e-22 108.2 172 41.9
Atru.chr13.1798 Acer truncatum HOM05D007935 ORTHO05D007393 1.1e-21 107.5 168 44.0
TWI32G0406 Tripterygium wilfordii HOM05D007935 ORTHO05D007393 1.4e-21 107.1 160 41.2
Dinv08012 Davidia involucrata HOM05D007935 ORTHO05D007393 7.1e-21 104.8 158 44.9
Manes.18G100400 Manihot esculenta HOM05D007935 ORTHO05D007393 9.3e-21 104.4 185 41.1
Nn5g27748 Nelumbo nucifera HOM05D007935 ORTHO05D007393 4.6e-20 102.1 173 38.2
Lj2g0007380 Lotus japonicus HOM05D007935 ORTHO05D007393 3.0e-19 99.4 161 41.6
Rhsim06G0096700 Rhododendron simsii HOM05D007935 ORTHO05D007393 1.1e-18 97.4 168 41.1
Lalb_Chr19g0129781 Lupinus albus HOM05D007935 ORTHO05D007393 3.3e-18 95.9 153 43.8
FvH4_4g19940 Fragaria vesca HOM05D007935 ORTHO05D007393 5.7e-18 95.1 162 43.2
Glyma.20G176200 Glycine max HOM05D007935 ORTHO05D007393 7.4e-18 94.7 165 42.4
TAR376G0933 Trochodendron aralioides HOM05D007935 ORTHO05D007393 9.6e-18 94.4 172 37.2
Glyma.10G215500 Glycine max HOM05D007935 ORTHO05D007393 8.2e-17 91.3 165 41.2
FAN12G0476 Fragaria x ananassa HOM05D007935 ORTHO05D007393 1.4e-16 90.5 165 41.8
CiPaw.16G062200 Carya illinoinensis HOM05D007935 ORTHO05D007393 4.1e-16 89.0 165 40.0
Ciclev10003091m.g Citrus clementina HOM05D007935 ORTHO05D007393 4.1e-16 89.0 148 43.2
Nn1g08393 Nelumbo nucifera HOM05D007935 ORTHO05D007393 6.9e-16 88.2 176 36.9
FAN07G1822 Fragaria x ananassa HOM05D007935 ORTHO05D007393 1.2e-15 87.4 170 40.6
Nitab4.5_0000560g0100 Nicotiana tabacum HOM05D007935 ORTHO05D007393 1.2e-15 87.4 187 36.4
Dinv41698 Davidia involucrata HOM05D007935 ORTHO05D007393 4.5e-15 85.5 146 41.1
PGR102G0669 Punica granatum HOM05D007935 ORTHO05D007393 5.8e-15 85.1 169 39.1
CiPaw.15G082200 Carya illinoinensis HOM05D007935 ORTHO05D007393 1.3e-14 84.0 167 41.3
CiPaw.15G082300 Carya illinoinensis HOM05D007935 ORTHO05D007393 1.3e-14 84.0 165 41.8
arahy.Tifrunner.gnm1.ann1.B1B3Q7 Arachis hypogaea HOM05D007935 ORTHO05D007393 1.1e-13 80.9 163 38.0
CSS0018652 Camellia sinensis var. sinensis HOM05D007935 ORTHO05D007393 4.2e-13 79.0 167 34.1
Sed0011111 Sechium edule HOM05D029613 ORTHO05D007393 5.5e-13 78.6 166 37.3
Solyc11g017390.2 Solanum lycopersicum HOM05D007935 ORTHO05D007393 5.5e-13 78.6 155 37.4
ClCG09G010460 Citrullus lanatus HOM05D029613 ORTHO05D007393 1.2e-12 77.4 173 37.0
Lalb_Chr01g0010021 Lupinus albus HOM05D007935 ORTHO05D007393 1.6e-12 77.0 158 35.4
Medtr1g096290 Medicago truncatula HOM05D007935 ORTHO05D007393 1.6e-12 77.0 153 36.6
THA.LOC104810516 Tarenaya hassleriana HOM05D010479 ORTHO05D007393 1.6e-12 77.0 167 35.9
TPR.G39557 Trifolium pratense HOM05D007935 ORTHO05D007393 1.6e-12 77.0 153 35.9
Migut.C01245 Erythranthe guttata HOM05D007935 ORTHO05D007393 4.6e-12 75.5 165 35.8
Sp5g26980 Schrenkiella parvula HOM05D010479 ORTHO05D007393 6.1e-12 75.1 178 36.5
arahy.Tifrunner.gnm1.ann1.QZIQ5C Arachis hypogaea HOM05D007935 ORTHO05D007393 1.0e-11 74.3 158 36.7
QL10p037244 Quercus lobata HOM05D009958 ORTHO05D007393 1.0e-11 74.3 174 35.1
QL10p038114 Quercus lobata HOM05D009958 ORTHO05D007393 1.0e-11 74.3 174 35.1
Carub.0002s1869 Capsella rubella HOM05D010479 ORTHO05D007393 1.3e-11 73.9 180 35.0
Oeu039600.1 Olea europaea HOM05D007935 ORTHO05D007393 1.8e-11 73.6 162 35.2
AL2G31520 Arabidopsis lyrata HOM05D010479 ORTHO05D007393 2.3e-11 73.2 178 37.6
Thhalv10019217m.g Eutrema salsugineum HOM05D010479 ORTHO05D007393 2.3e-11 73.2 181 40.3
Sc23g0001170 Simmondsia chinensis HOM05D007935 ORTHO05D007393 2.3e-11 73.2 142 37.3
Nitab4.5_0000422g0110 Nicotiana tabacum HOM05D007935 ORTHO05D007393 3.9e-11 72.4 208 31.7
RcHm_v2.0_Chr6g0272051 Rosa chinensis HOM05D007935 ORTHO05D007393 3.9e-11 72.4 163 36.8
AUR62004654 Chenopodium quinoa HOM05D007935 ORTHO05D007393 5.1e-11 72.0 178 34.3
CARHR064730 Cardamine hirsuta HOM05D010479 ORTHO05D007393 6.7e-11 71.6 175 36.6
Hma1.2p1_0363F.1_g136610 Hydrangea macrophylla HOM05D007935 ORTHO05D007393 6.7e-11 71.6 164 36.0
PGSC0003DMG400009223 Solanum tuberosum HOM05D007935 ORTHO05D007393 6.7e-11 71.6 156 34.0
AT1G71910 Arabidopsis thaliana HOM05D010479 ORTHO05D007393 1.5e-10 70.5 178 36.5
Phvul.007G090200 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 1.5e-10 70.5 163 39.9
Lj5g0011924 Lotus japonicus HOM05D007935 ORTHO05D007393 1.9e-10 70.1 160 33.1
SGA_v2.0_scaffold118G32471 Striga asiatica HOM05D007935 ORTHO05D007393 2.5e-10 69.7 155 36.8
SalBow7G1894 Salvia bowleyana HOM05D007935 ORTHO05D007393 5.7e-10 68.6 164 36.0
C06p35260 Brassica napus HOM05D001833 ORTHO05D001776 9.7e-10 67.8 168 34.5
BraA07t31373Z Brassica rapa HOM05D010479 ORTHO05D007393 9.7e-10 67.8 173 32.9
Peaxi162Scf00310g00073 Petunia axillaris HOM05D007935 ORTHO05D007393 1.6e-09 67.0 187 33.2
Oeu017878.1 Olea europaea HOM05D007935 ORTHO05D007393 2.2e-09 66.6 160 35.6
BcaC03g15309 Brassica carinata HOM05D010479 ORTHO05D007393 4.8e-09 65.5 171 35.7
BolC2t08970H Brassica oleracea HOM05D010479 ORTHO05D007393 4.8e-09 65.5 171 35.7
AL106U10030 Arabidopsis lyrata HOM05D010479 ORTHO05D007393 6.3e-09 65.1 113 43.4
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 6.3e-09 65.1 169 33.1
BcaB03g14909 Brassica carinata HOM05D010479 ORTHO05D007393 8.2e-09 64.7 173 33.5
BcaB03g14911 Brassica carinata HOM05D010479 ORTHO05D007393 8.2e-09 64.7 173 33.5
BraA07t30685Z Brassica rapa HOM05D001833 ORTHO05D001776 8.2e-09 64.7 172 32.0
Sopen11g009330 Solanum pennellii HOM05D007935 ORTHO05D007393 8.2e-09 64.7 159 34.0
VMungo0464G1609 Vigna mungo HOM05D007935 ORTHO05D007393 8.2e-09 64.7 161 32.9
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.4e-08 63.9 165 36.4
Manes.12G081400 Manihot esculenta HOM05D009958 ORTHO05D007393 1.4e-08 63.9 169 31.4
Lj4P507T35 Lonicera japonica HOM05D007935 ORTHO05D007393 4.1e-08 62.4 99 38.4
Eucgr.F04128 Eucalyptus grandis HOM05D007935 ORTHO05D007393 5.3e-08 62.0 171 29.2
BcaB03g15625 Brassica carinata HOM05D010479 ORTHO05D007393 6.9e-08 61.6 163 35.0
BcaB05g24691 Brassica carinata HOM05D010479 ORTHO05D007393 6.9e-08 61.6 167 33.5
Haze_19351 Corylus avellana HOM05D009958 ORTHO05D007393 9.0e-08 61.2 177 35.6
CsaV3_2G033460 Cucumis sativus L. HOM05D030816 ORTHO05D028878 9.0e-08 61.2 161 33.5
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 1.2e-07 60.8 175 31.4
BcaC08g46627 Brassica carinata HOM05D010479 ORTHO05D007393 1.5e-07 60.5 173 31.2
BolC6t39652H Brassica oleracea HOM05D010479 ORTHO05D007393 1.5e-07 60.5 173 31.2
FAN20G0410 Fragaria x ananassa HOM05D007935 ORTHO05D007393 1.5e-07 60.5 139 39.6
Lj4P515T30 Lonicera japonica HOM05D007935 ORTHO05D007393 2.0e-07 60.1 99 37.4
arahy.Tifrunner.gnm1.ann1.DLN685 Arachis hypogaea HOM05D007935 ORTHO05D007393 2.6e-07 59.7 165 35.2
Thecc.01G147200 Theobroma cacao HOM05D009958 ORTHO05D007393 3.4e-07 59.3 182 33.5
Manes.13G153300 Manihot esculenta HOM05D009958 ORTHO05D007393 4.5e-07 58.9 162 30.9
MELO3C008117.2 Cucumis melo HOM05D030816 ORTHO05D028878 5.9e-07 58.5 163 31.3
Cpa.g.sc138.32 Carica papaya HOM05D009958 ORTHO05D007393 7.7e-07 58.2 160 28.1
Cfa020918 Carpinus fangiana HOM05D009958 ORTHO05D007393 1.0e-06 57.8 172 34.3
Aa31LG4G8710 Aethionema arabicum HOM05D010479 ORTHO05D007393 1.3e-06 57.4 164 31.7
A07p30490 Brassica napus HOM05D001833 ORTHO05D001776 1.3e-06 57.4 171 31.0
Psat6g186560 Pisum sativum HOM05D007935 ORTHO05D007393 3.8e-06 55.8 153 28.8
Migut.N03344 Erythranthe guttata HOM05D007935 ORTHO05D007393 5.0e-06 55.5 169 33.7
EL10Ac1g00075 Beta vulgaris HOM05D007935 ORTHO05D007393 6.5e-06 55.1 137 37.2


User provided reference genes

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