Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 2.2e-163 578.9 298 100.0
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.0e-136 490.3 302 86.1
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.2e-132 476.9 298 85.2
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 2.1e-129 466.1 311 80.4
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.5e-129 465.3 304 80.9
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.6e-118 428.7 277 81.9
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 2.1e-113 412.9 306 72.5
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.5e-111 406.8 311 70.1
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 8.1e-110 401.0 316 69.6
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 3.1e-109 399.1 322 71.4
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 3.4e-108 395.6 323 65.3
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 5.8e-108 394.8 303 69.3
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 7.6e-108 394.4 298 70.8
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 1.7e-107 393.3 298 70.5
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 1.9e-106 389.8 298 67.4
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.6e-105 386.7 317 66.2
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 2.7e-105 386.0 305 67.2
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 3.5e-105 385.6 313 66.1
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.0e-105 384.8 299 68.9
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 7.9e-105 384.4 300 69.0
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 7.9e-105 384.4 314 67.2
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 1.3e-104 383.6 300 68.3
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.9e-104 382.1 300 68.7
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 5.1e-104 381.7 301 66.4
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 6.6e-104 381.3 306 65.4
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 8.7e-104 380.9 310 66.8
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 8.7e-104 380.9 310 67.1
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 1.1e-103 380.6 300 67.7
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.5e-103 379.4 309 65.0
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 2.1e-102 376.3 313 65.2
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 2.1e-102 376.3 308 66.6
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 2.8e-102 375.9 308 65.6
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 2.8e-102 375.9 310 64.8
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 3.6e-102 375.6 301 67.8
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 1.8e-101 373.2 308 64.3
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 2.4e-101 372.9 305 64.6
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 3.1e-101 372.5 293 66.9
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 4.0e-101 372.1 302 65.2
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 6.9e-101 371.3 299 66.6
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 6.9e-101 371.3 299 66.6
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 9.0e-101 370.9 298 66.4
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 1.5e-100 370.2 311 65.0
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 2.0e-100 369.8 308 65.6
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 5.8e-100 368.2 217 82.9
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 6.4e-99 364.8 322 64.0
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 8.4e-99 364.4 312 65.4
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 8.4e-99 364.4 299 65.9
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.4e-98 363.6 296 64.9
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 1.9e-98 363.2 299 65.2
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 3.2e-98 362.5 312 65.4
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 3.2e-98 362.5 312 61.9
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.2e-98 362.5 299 66.6
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 7.1e-98 361.3 313 63.9
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 9.3e-98 360.9 311 64.0
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.6e-97 360.1 300 64.3
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 2.7e-97 359.4 300 63.7
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 2.7e-97 359.4 297 66.0
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 2.7e-97 359.4 315 63.2
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 6.0e-97 358.2 318 61.6
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 7.9e-97 357.8 297 65.0
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.3e-96 356.3 313 62.0
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 3.9e-96 355.5 310 63.5
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 3.9e-96 355.5 309 62.5
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 5.1e-96 355.1 304 61.8
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 6.7e-96 354.8 308 63.3
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 8.7e-96 354.4 313 60.7
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.5e-95 353.6 304 62.2
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 2.5e-95 352.8 217 78.8
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 5.6e-95 351.7 311 62.1
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 7.4e-95 351.3 308 62.7
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.3e-94 350.5 311 61.1
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 1.3e-94 350.5 318 59.7
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 2.1e-94 349.7 309 62.1
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 3.7e-94 349.0 307 60.3
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 6.2e-94 348.2 298 63.1
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 6.2e-94 348.2 314 61.5
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 6.2e-94 348.2 306 60.8
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 3.1e-93 345.9 306 61.8
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 5.3e-93 345.1 235 72.3
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 9.0e-93 344.4 341 58.9
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 2.0e-92 343.2 303 63.4
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 2.0e-92 343.2 320 59.4
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 3.4e-92 342.4 315 58.7
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 7.6e-92 341.3 303 63.0
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 7.6e-92 341.3 303 61.4
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.3e-91 340.5 301 61.5
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 1.7e-91 340.1 294 60.5
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 3.8e-91 339.0 334 56.3
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 4.9e-91 338.6 298 61.1
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 1.9e-90 336.7 222 74.3
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 3.2e-90 335.9 322 61.2
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 9.3e-90 334.3 306 60.1
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 6.0e-89 331.6 297 60.9
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 7.9e-89 331.3 217 73.7
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.3e-88 330.5 318 60.1
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.8e-88 330.1 318 58.2
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.8e-88 330.1 328 59.1
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 1.9e-87 326.6 226 69.5
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 3.3e-87 325.9 334 55.1
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 9.6e-87 324.3 303 61.1
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 2.1e-86 323.2 211 74.4
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 2.8e-86 322.8 234 68.4
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 1.5e-84 317.0 285 63.5
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 7.6e-84 314.7 300 57.3
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 6.5e-83 311.6 270 57.4
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 8.4e-83 311.2 293 60.4
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 7.2e-82 308.1 298 60.7
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 2.7e-81 306.2 291 58.8
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 6.1e-81 305.1 198 73.2
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 5.1e-80 302.0 243 61.3
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 1.1e-77 294.3 277 57.0
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 6.1e-73 278.5 266 60.9
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.8e-72 276.9 256 60.9
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 1.5e-68 263.8 209 57.4
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 3.2e-66 256.1 201 64.2
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 1.5e-63 247.3 236 53.4
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 4.1e-61 239.2 199 62.3
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 1.5e-58 230.7 191 63.9
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 2.7e-57 226.5 233 47.6
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 8.3e-46 188.3 185 51.4
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 7.0e-45 185.3 144 63.2
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.5e-42 177.6 109 78.9
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 5.2e-40 169.1 267 44.6
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.4e-37 161.0 161 49.1
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 3.4e-31 139.8 83 79.5
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 4.4e-31 139.4 83 79.5
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.3e-30 137.9 169 49.1
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 1.4e-29 134.4 232 34.9
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 4.6e-28 129.4 125 50.4
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 1.6e-25 120.9 68 82.4
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.0e-24 118.2 83 68.7
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 2.6e-23 113.6 150 36.7
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 9.2e-21 105.1 199 30.7
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.9e-18 97.4 146 44.5
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 6.8e-16 89.0 135 45.9
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 2.0e-15 87.4 110 44.5
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.0e-11 73.6 98 50.0
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 8.6e-11 72.0 83 49.4
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 8.1e-09 65.5 140 36.4
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-08 65.1 46 69.6
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 2.6e-07 60.5 35 77.1
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 7.6e-07 58.9 31 83.9
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 4.9e-06 56.2 86 41.9


User provided reference genes

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