Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.2e-178 629.0 358 100.0
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 9.3e-145 517.3 375 76.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 3.1e-140 502.3 359 79.7
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 2.0e-139 499.6 362 78.7
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 9.4e-129 464.2 362 69.1
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 5.1e-127 458.4 362 68.0
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.3e-126 455.7 362 67.7
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 7.0e-100 368.2 373 61.7
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.1e-97 360.9 371 62.5
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.8e-95 353.6 366 56.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 5.4e-92 342.0 372 61.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 7.0e-92 341.7 384 59.4
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 5.0e-90 335.5 364 54.9
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.3e-89 332.4 371 55.0
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.4e-87 327.4 362 53.9
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-87 327.4 354 58.5
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 4.0e-87 325.9 362 53.9
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.9e-87 324.7 364 59.9
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 8.3e-85 318.2 401 50.6
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.0e-82 311.2 361 53.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.0e-82 311.2 366 53.0
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.7e-82 310.5 378 55.8
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.9e-81 307.0 357 53.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.3e-81 305.8 357 51.8
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 5.6e-81 305.4 359 54.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.5e-81 304.7 357 52.9
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.2e-80 304.3 379 48.8
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.1e-80 303.5 383 49.1
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.8e-80 303.1 357 52.7
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.1e-79 301.2 379 55.9
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.4e-79 300.8 379 55.1
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.1e-79 299.7 380 53.9
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 8.9e-79 298.1 357 52.4
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.7e-77 292.7 364 48.6
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.3e-77 291.6 364 48.6
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.1e-76 291.2 373 49.1
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 3.2e-76 289.7 361 51.8
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 7.0e-76 288.5 361 51.8
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 9.2e-76 288.1 431 48.3
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.5e-75 286.2 377 51.2
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.9e-73 280.4 376 52.4
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.9e-73 280.4 382 46.1
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.3e-73 278.5 363 48.5
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.6e-72 277.3 367 46.6
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 6.2e-72 275.4 387 45.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.1e-71 273.1 371 47.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 4.0e-71 272.7 365 49.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.2e-69 266.9 373 46.4
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.3e-69 265.0 373 44.8
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.9e-68 263.8 428 43.5
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.4e-68 262.3 369 45.8
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.0e-66 256.5 322 52.8
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 8.6e-66 255.0 367 45.5
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 6.2e-64 248.8 358 43.3
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.4e-63 247.7 382 47.4
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 8.9e-63 245.0 374 45.7
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 2.6e-62 243.4 397 41.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.2e-61 240.4 365 46.8
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.8e-61 239.6 364 42.9
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 3.0e-58 229.9 367 43.6
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.1e-57 228.0 362 42.0
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-57 227.6 365 42.7
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 4.3e-57 226.1 316 45.9
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 4.3e-57 226.1 316 45.9
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-56 224.6 364 42.3
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.1e-56 223.8 393 43.8
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 8.1e-56 221.9 361 44.9
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.4e-55 220.3 363 41.9
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.5e-54 217.6 363 40.8
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.7e-53 214.2 363 42.4
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 2.9e-53 213.4 392 41.6
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 3.8e-53 213.0 371 40.2
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 8.4e-53 211.8 400 39.5
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.1e-52 211.5 365 39.5
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.4e-52 209.1 373 38.9
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.7e-51 206.8 362 38.4
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.0e-51 205.7 390 41.3
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.8e-51 205.3 362 38.1
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.5e-49 201.1 364 39.0
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 3.3e-49 199.9 398 39.4
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 5.6e-49 199.1 366 39.6
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.3e-48 198.0 362 37.3
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.3e-48 198.0 366 38.8
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.1e-48 197.2 386 39.9
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.2e-48 195.7 374 40.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.8e-47 194.1 381 38.1
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.0e-46 190.7 359 36.8
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.4e-46 189.9 366 38.8
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 9.9e-46 188.3 369 38.8
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.9e-45 186.0 367 38.7
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.4e-44 184.5 384 41.4
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 5.4e-44 182.6 110 80.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-43 181.4 381 36.5
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.2e-43 181.4 362 35.1
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.7e-43 180.3 378 36.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 6.0e-43 179.1 376 35.1
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.3e-42 177.2 346 40.8
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.9e-42 176.4 378 36.5
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.9e-42 176.4 359 36.5
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 8.7e-42 175.3 359 38.7
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.5e-41 174.5 361 38.0
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.3e-40 171.4 365 38.4
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 8.1e-40 168.7 355 41.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-39 168.3 363 35.3
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-39 168.3 363 35.3
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.4e-39 167.9 363 35.8
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.8e-39 167.5 363 36.4
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.0e-38 164.1 358 36.3
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.6e-38 163.7 436 36.9
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.4e-38 163.3 360 35.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 5.8e-38 162.5 365 35.6
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 5.8e-38 162.5 364 35.7
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.9e-37 160.2 355 35.8
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 6.4e-37 159.1 112 71.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 6.4e-37 159.1 112 71.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 7.1e-36 155.6 197 47.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 9.3e-36 155.2 365 32.9
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 9.3e-36 155.2 365 32.9
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.1e-35 154.1 356 34.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.1e-35 154.1 368 33.7
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.7e-35 153.7 364 34.1
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 7.9e-35 152.1 362 33.7
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.8e-34 151.0 358 33.8
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.8e-34 151.0 112 67.9
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.3e-34 150.6 359 33.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 5.1e-34 149.4 345 34.8
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.5e-33 147.1 345 34.5
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 3.3e-33 146.7 359 33.4
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.6e-32 144.4 386 37.0
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 4.0e-31 139.8 114 58.8
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-30 137.9 361 31.3
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.6e-30 137.1 115 59.1
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 8.4e-29 132.1 483 29.2
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.1e-28 131.7 111 56.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.9e-28 131.0 496 28.4
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 4.2e-28 129.8 110 55.5
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 4.2e-28 129.8 110 55.5
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 4.2e-28 129.8 107 65.4
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 4.2e-28 129.8 88 68.2
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 5.5e-28 129.4 117 55.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-27 128.3 366 31.4
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-27 128.3 366 31.4
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.3e-26 124.8 107 53.3
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.3e-26 124.0 104 62.5
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.3e-26 124.0 104 62.5
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 8.7e-26 122.1 112 60.7
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 8.7e-26 122.1 108 61.1
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-25 121.3 359 30.4
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-25 121.3 359 30.4
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-25 121.3 359 30.4
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 9.7e-25 118.6 139 49.6
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.3e-24 118.2 111 55.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.7e-24 116.7 73 76.7
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.2e-24 115.5 73 79.5
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.2e-24 115.5 419 27.2
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 3.1e-23 113.6 108 58.3
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.1e-23 113.6 116 55.2
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 5.3e-23 112.8 130 50.8
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 6.9e-23 112.5 367 30.0
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.6e-22 110.5 339 36.3
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 5.9e-22 109.4 110 56.4
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 9.4e-20 102.1 105 45.7
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.6e-19 101.3 99 46.5
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.5e-17 94.0 112 44.6
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 6.9e-15 85.9 83 48.2
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 9.1e-15 85.5 102 41.2
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.5e-14 84.7 98 46.9
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 3.4e-14 83.6 98 46.9
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 4.5e-14 83.2 92 46.7
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.8e-13 80.1 73 52.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 4.7e-11 73.2 43 81.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.7e-08 64.7 90 38.9
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.2e-08 64.3 91 39.6
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.8e-07 61.2 69 43.5


User provided reference genes

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