Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 6.5e-48 193.7 99 100.0
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 4.7e-38 161.0 99 80.8
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 5.2e-37 157.5 99 78.8
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 5.2e-37 157.5 99 78.8
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 2.8e-35 151.8 97 80.4
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 9.2e-34 146.7 93 76.3
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 3.5e-33 144.8 93 76.3
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 4.5e-33 144.4 95 73.7
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 7.8e-33 143.7 96 71.9
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 2.3e-32 142.1 90 76.7
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 8.6e-32 140.2 94 77.7
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 7.3e-31 137.1 95 71.6
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 7.3e-31 137.1 104 67.3
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 1.6e-30 136.0 96 69.8
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 2.1e-30 135.6 95 70.5
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 2.8e-30 135.2 95 70.5
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 8.0e-30 133.7 91 71.4
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 8.0e-30 133.7 91 71.4
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 8.0e-30 133.7 96 67.7
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 1.0e-29 133.3 95 69.5
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 1.4e-29 132.9 98 62.2
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 2.3e-29 132.1 96 67.7
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 8.9e-29 130.2 89 71.9
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 1.2e-28 129.8 98 63.3
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 1.5e-28 129.4 96 65.6
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 2.0e-28 129.0 98 63.3
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 2.0e-28 129.0 87 71.3
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 2.6e-28 128.6 93 66.7
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 5.7e-28 127.5 87 70.1
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 5.7e-28 127.5 94 69.1
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 5.7e-28 127.5 93 64.5
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 7.5e-28 127.1 96 64.6
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 9.8e-28 126.7 94 62.8
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 1.7e-27 125.9 97 64.9
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 1.8e-26 122.5 95 62.1
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 1.8e-26 122.5 85 68.2
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 4.1e-26 121.3 86 68.6
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 2.7e-25 118.6 93 63.4
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 3.5e-25 118.2 98 59.2
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 3.5e-25 118.2 86 64.0
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 7.8e-25 117.1 92 59.8
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 1.3e-24 116.3 90 58.9
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 1.7e-24 115.9 72 77.8
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 2.3e-24 115.5 92 60.9
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 3.9e-24 114.8 92 63.0
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 5.0e-24 114.4 92 62.0
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 5.0e-24 114.4 98 57.1
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 1.1e-23 113.2 86 62.8
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 1.5e-23 112.8 92 59.8
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 1.9e-23 112.5 96 57.3
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 2.5e-23 112.1 92 60.9
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 1.8e-21 105.9 90 54.4
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 6.8e-21 104.0 94 55.3
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 8.9e-21 103.6 93 57.0
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 2.0e-20 102.4 66 69.7
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 7.5e-20 100.5 68 73.5
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 1.3e-19 99.8 75 65.3
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 1.7e-19 99.4 68 70.6
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 2.2e-19 99.0 67 71.6
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 2.9e-19 98.6 68 72.1
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 2.9e-19 98.6 79 60.8
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 3.7e-19 98.2 68 67.6
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 3.7e-19 98.2 68 67.6
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 1.1e-18 96.7 58 72.4
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 1.4e-18 96.3 56 76.8
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 1.9e-18 95.9 88 51.1
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 2.4e-18 95.5 60 76.7
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 3.2e-18 95.1 68 66.2
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 7.0e-18 94.0 56 73.2
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 1.6e-17 92.8 55 74.5
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 5.0e-16 87.8 61 59.0
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 5.0e-16 87.8 69 53.6
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 6.6e-16 87.4 78 59.0
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 8.6e-16 87.0 76 50.0
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 8.6e-16 87.0 49 83.7
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 8.6e-16 87.0 116 44.8
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 5.6e-15 84.3 69 53.6
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 1.6e-14 82.8 158 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 6.8e-13 77.4 64 53.1
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 1.2e-12 76.6 73 49.3
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 3.4e-12 75.1 70 55.7
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 6.4e-11 70.9 50 66.0
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 1.4e-10 69.7 76 42.1
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 3.2e-10 68.6 51 64.7
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 5.4e-10 67.8 47 68.1
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 6.6e-08 60.8 35 74.3
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 8.6e-08 60.5 57 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3283 Anthoceros agrestis HOM05D007718 ORTHO05D009752 3.6e-06 55.1 51 49.0


User provided reference genes

Program Settings