Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G176500 Theobroma cacao HOM05D007884 ORTHO05D009968 2.4e-239 832.0 495 100.0
Duzib177G0356 Durio zibethinus HOM05D007884 ORTHO05D009968 6.2e-163 578.2 495 75.8
Gohir.D07G090700 Gossypium hirsutum HOM05D007884 ORTHO05D009968 3.1e-146 522.7 495 67.7
Gorai.001G097200 Gossypium raimondii HOM05D007884 ORTHO05D009968 1.2e-145 520.8 495 66.9
Gohir.A07G085300 Gossypium hirsutum HOM05D007884 ORTHO05D009968 1.1e-143 514.2 495 66.5
COL.COLO4_22419 Corchorus olitorius HOM05D007884 ORTHO05D009968 1.1e-111 407.9 355 75.8
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 1.7e-96 357.5 519 43.7
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 1.4e-93 347.8 383 58.5
CiPaw.03G016000 Carya illinoinensis HOM05D007884 ORTHO05D009968 1.4e-90 337.8 380 63.2
QL09p002129 Quercus lobata HOM05D007884 ORTHO05D009968 1.3e-88 331.3 548 41.4
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 1.4e-82 311.2 519 45.5
Ciclev10019950m.g Citrus clementina HOM05D007884 ORTHO05D009968 3.5e-81 306.6 387 59.2
Lj9P699T19 Lonicera japonica HOM05D007884 ORTHO05D009968 5.2e-77 292.7 381 57.0
ClCG10G005030 Citrullus lanatus HOM05D007884 ORTHO05D009968 6.7e-77 292.4 383 56.7
Dinv09394 Davidia involucrata HOM05D007884 ORTHO05D009968 5.7e-76 289.3 427 53.2
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 5.7e-76 289.3 510 40.0
TAR383G0946 Trochodendron aralioides HOM05D007884 ORTHO05D009968 2.0e-73 280.8 375 55.7
TWI75G0081 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 3.5e-73 280.0 471 51.6
CsaV3_4G033680 Cucumis sativus L. HOM05D007884 ORTHO05D009968 2.2e-72 277.3 495 49.3
CANSAT25G3642 Cannabis sativa HOM05D007884 ORTHO05D009968 2.9e-72 276.9 516 41.5
Sc26g0002320 Simmondsia chinensis HOM05D007884 ORTHO05D009968 1.5e-71 274.6 375 54.1
Sabra19G0086300 Salix brachista HOM05D007884 ORTHO05D009968 1.6e-70 271.2 510 42.2
Sed0007017 Sechium edule HOM05D007884 ORTHO05D009968 6.8e-69 265.8 372 43.3
Actinidia29389 Actinidia chinensis HOM05D007884 ORTHO05D009968 1.4e-66 258.1 347 55.6
Hma1.2p1_0004F.1_g003780 Hydrangea macrophylla HOM05D007884 ORTHO05D009968 1.6e-65 254.6 482 46.9
MD08G1213200 Malus domestica HOM05D007884 ORTHO05D009968 2.7e-65 253.8 496 46.8
PGR031G2984 Punica granatum HOM05D007884 ORTHO05D009968 7.7e-65 252.3 442 43.2
TWI18G0215 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 1.3e-64 251.5 414 40.6
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 1.7e-64 251.1 376 37.2
Nitab4.5_0006974g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 2.3e-64 250.8 409 42.1
MELO3C016698.2 Cucumis melo HOM05D007884 ORTHO05D009968 3.8e-64 250.0 332 54.5
Eucgr.F02657 Eucalyptus grandis HOM05D007884 ORTHO05D009968 3.8e-64 250.0 397 53.7
Oeu023202.1 Olea europaea HOM05D007884 ORTHO05D009968 1.9e-63 247.7 370 53.0
Nitab4.5_0005550g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 5.5e-63 246.1 374 51.1
Lj2g0010779 Lotus japonicus HOM05D007884 ORTHO05D009968 2.1e-62 244.2 438 44.7
PGSC0003DMG400013578 Solanum tuberosum HOM05D007884 ORTHO05D009968 1.0e-61 241.9 378 51.3
Medtr6g017035 Medicago truncatula HOM05D007884 ORTHO05D009968 3.0e-61 240.4 422 46.4
HanXRQChr17g0559001 Helianthus annuus HOM05D007884 ORTHO05D009968 8.3e-59 232.3 350 54.6
Aqoxy7G02021 Aquilegia oxysepala HOM05D007884 ORTHO05D009968 1.1e-58 231.9 375 45.1
Migut.C01368 Erythranthe guttata HOM05D007884 ORTHO05D009968 1.1e-58 231.9 348 52.3
Sopen07g021970 Solanum pennellii HOM05D007884 ORTHO05D009968 1.8e-58 231.1 378 50.0
MSTRG.1590 Avicennia marina HOM05D007884 ORTHO05D009968 2.4e-58 230.7 377 50.1
CAN.G63.2 Capsicum annuum HOM05D007884 ORTHO05D009968 3.1e-58 230.3 378 50.0
CSS0033652 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 7.0e-58 229.2 386 50.3
CSS0035845 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 7.0e-58 229.2 386 50.3
SGA_v2.0_scaffold118G32599 Striga asiatica HOM05D007884 ORTHO05D009968 1.6e-57 228.0 382 49.2
DCAR_014075 Daucus carota HOM05D007884 ORTHO05D009968 4.5e-57 226.5 370 48.4
Phvul.003G017800 Phaseolus vulgaris HOM05D007884 ORTHO05D009968 4.5e-57 226.5 491 41.3
PSO242G0004 Papaver somniferum HOM05D007884 ORTHO05D009968 5.9e-57 226.1 372 50.3
EL10Ac1g01640 Beta vulgaris HOM05D007884 ORTHO05D009968 5.0e-56 223.0 436 45.0
AUR62022398 Chenopodium quinoa HOM05D007884 ORTHO05D009968 1.9e-55 221.1 445 44.5
Ah.05g168770 Amaranthus hybridus HOM05D007884 ORTHO05D009968 3.3e-55 220.3 491 43.4
VMungo1309G1853 Vigna mungo HOM05D007884 ORTHO05D009968 4.3e-55 219.9 486 41.6
Glyma.19G044700 Glycine max HOM05D007884 ORTHO05D009968 5.6e-55 219.5 481 42.6
Lalb_Chr02g0158331 Lupinus albus HOM05D007884 ORTHO05D009968 3.6e-54 216.9 425 46.1
Psat1g062080 Pisum sativum HOM05D007884 ORTHO05D009968 1.8e-53 214.5 373 46.6
Nn4g26038 Nelumbo nucifera HOM05D007884 ORTHO05D009968 9.8e-52 208.8 368 49.2
Nn3g17503 Nelumbo nucifera HOM05D007884 ORTHO05D009968 2.9e-51 207.2 372 48.7
Lsat_1_v5_gn_4_133080 Lactuca sativa HOM05D007884 ORTHO05D009968 8.3e-51 205.7 373 47.2
Cpa.g.sc21.77 Carica papaya HOM05D007884 ORTHO05D009968 4.1e-50 203.4 475 43.6
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 5.4e-50 203.0 502 32.5
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 2.0e-49 201.1 509 31.4
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 2.0e-49 201.1 509 31.4
Atru.chr13.2470 Acer truncatum HOM05D007884 ORTHO05D009968 2.5e-47 194.1 291 58.8
Manes.18G118701 Manihot esculenta HOM05D007884 ORTHO05D009968 8.0e-46 189.1 284 55.3
TPR.G21024 Trifolium pratense HOM05D007884 ORTHO05D009968 1.3e-43 181.8 439 42.8
HPP92_008446 Vanilla planifolia HOM05D007884 ORTHO05D009968 2.9e-43 180.6 421 44.7
HPP92_008463 Vanilla planifolia HOM05D007884 ORTHO05D009968 2.7e-41 174.1 368 47.6
FAN04G3024 Fragaria x ananassa HOM05D007884 ORTHO05D009968 1.0e-40 172.2 509 30.6
Ca_26346_v3 Cicer arietinum L. HOM05D007884 ORTHO05D009968 1.1e-39 168.7 272 34.2
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 1.9e-39 167.9 367 30.0
MBI04_g00944_MAGBIO Magnolia biondii HOM05D007884 ORTHO05D009968 5.6e-39 166.4 208 39.9
AUR62043537 Chenopodium quinoa HOM05D007884 ORTHO05D009968 1.2e-38 165.2 288 52.4
Os03g0119700 Oryza sativa ssp. japonica HOM05D007884 ORTHO05D009968 2.2e-35 154.5 380 28.4
CDE04G2395 Ceratophyllum demersum HOM05D007884 ORTHO05D009968 2.9e-35 154.1 258 55.8
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 2.9e-35 154.1 311 32.2
ATR0716G085 Amborella trichopoda HOM05D007884 ORTHO05D009968 3.2e-26 124.0 375 42.4
ECA232G0955 Erigeron canadensis HOM05D007884 ORTHO05D009968 1.1e-23 115.5 283 47.0
SEGI_26452 Sequoiadendron giganteum HOM05D007884 ORTHO05D009968 4.7e-22 110.2 370 38.9
CAN.G6574.1 Capsicum annuum HOM05D007884 ORTHO05D009968 2.9e-19 100.9 249 51.0
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 1.7e-11 75.1 200 26.5
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 2.7e-09 67.8 169 26.6
Medtr5g006640 Medicago truncatula HOM05D000424 ORTHO05D000355 4.6e-09 67.0 206 23.3
MSTRG.28276 Avicennia marina HOM05D002986 ORTHO05D003966 1.3e-08 65.5 156 28.2
Glyma.11G007400 Glycine max HOM05D000424 ORTHO05D000355 1.3e-08 65.5 193 22.8
PGR129G0012 Punica granatum HOM05D000424 ORTHO05D000355 3.9e-08 63.9 206 25.2
PGR142G0651 Punica granatum HOM05D000424 ORTHO05D000355 3.9e-08 63.9 206 25.2
CANSAT78G0678 Cannabis sativa HOM05D000424 ORTHO05D000355 8.7e-08 62.8 200 24.0
SHI00491 Sapria himalayana HOM05D000424 ORTHO05D000355 1.9e-07 61.6 204 23.0
SGA_v2.0_scaffold43G16408 Striga asiatica HOM05D002986 ORTHO05D003966 1.9e-07 61.6 152 25.0
SGA_v2.0_scaffold581G53045 Striga asiatica HOM05D002986 ORTHO05D003966 1.9e-07 61.6 152 25.0
Migut.N00201 Erythranthe guttata HOM05D000424 ORTHO05D000355 2.5e-07 61.2 213 24.4
Hma1.2p1_0169F.1_g074750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.5e-07 61.2 259 22.8
SHI16834 Sapria himalayana HOM05D007383 ORTHO05D009254 2.5e-07 61.2 213 24.4
TWI15G0484 Tripterygium wilfordii HOM05D007383 ORTHO05D009254 3.3e-07 60.8 205 24.9
HanXRQChr04g0120401 Helianthus annuus HOM05D002986 ORTHO05D003966 5.6e-07 60.1 157 24.8
Medtr5g044120 Medicago truncatula HOM05D005622 ORTHO05D002854 7.4e-07 59.7 222 24.8
SalBow4G2308 Salvia bowleyana HOM05D002986 ORTHO05D003966 7.4e-07 59.7 156 25.6
SalBow5G2864 Salvia bowleyana HOM05D001628 ORTHO05D001568 9.6e-07 59.3 156 26.3
QL08p046166 Quercus lobata HOM05D002986 ORTHO05D003966 1.3e-06 58.9 153 27.5
DCAR_022794 Daucus carota HOM05D002986 ORTHO05D003966 1.6e-06 58.5 156 25.6
SEGI_15364 Sequoiadendron giganteum HOM05D007173 ORTHO05D009151 1.6e-06 58.5 194 24.2
Aqoxy5G03254 Aquilegia oxysepala HOM05D007173 ORTHO05D009151 2.1e-06 58.2 319 25.1
DCAR_006392 Daucus carota HOM05D002986 ORTHO05D003966 2.1e-06 58.2 156 25.0
Hund17562 Selenicereus undatus HOM05D007884 ORTHO05D009968 2.1e-06 58.2 64 35.9
TWI73G0154 Tripterygium wilfordii HOM05D007937 ORTHO05D010000 2.1e-06 58.2 218 23.9
Lsat_1_v5_gn_7_4680 Lactuca sativa HOM05D002986 ORTHO05D003966 2.8e-06 57.8 157 24.8
Peaxi162Scf00078g00351 Petunia axillaris HOM05D006237 ORTHO05D002967 2.8e-06 57.8 61 37.7
CANSAT80G1535 Cannabis sativa HOM05D000424 ORTHO05D000355 3.7e-06 57.4 197 22.8
Haze_15702 Corylus avellana HOM05D002986 ORTHO05D003966 4.8e-06 57.0 152 26.3
Ca_16213_v3 Cicer arietinum L. HOM05D007383 ORTHO05D009254 8.1e-06 56.2 246 21.5


User provided reference genes

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