Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G174200 Theobroma cacao HOM05D006690 ORTHO05D008541 1.7e-157 559.3 291 100.0
Duzib177G0086 Durio zibethinus HOM05D006690 ORTHO05D008541 3.1e-130 468.8 291 82.8
COL.COLO4_14973 Corchorus olitorius HOM05D006690 ORTHO05D008541 7.4e-124 447.6 293 79.9
Gohir.A05G252900 Gossypium hirsutum HOM05D006690 ORTHO05D008541 1.4e-119 433.3 260 83.8
Gorai.009G266300 Gossypium raimondii HOM05D006690 ORTHO05D008541 5.5e-119 431.4 255 84.7
Gohir.D05G254800 Gossypium hirsutum HOM05D006690 ORTHO05D008541 9.3e-119 430.6 256 84.4
Manes.02G208400 Manihot esculenta HOM05D006690 ORTHO05D008541 1.5e-108 396.7 291 71.1
Potri.019G073900 Populus trichocarpa HOM05D006690 ORTHO05D008541 1.5e-108 396.7 292 70.2
Cpa.g.sc21.64 Carica papaya HOM05D006690 ORTHO05D008541 2.0e-108 396.4 294 71.8
Manes.18G119400 Manihot esculenta HOM05D006690 ORTHO05D008541 2.0e-108 396.4 233 83.3
Cfa008102 Carpinus fangiana HOM05D006690 ORTHO05D008541 5.7e-108 394.8 267 76.0
Actinidia23025 Actinidia chinensis HOM05D006690 ORTHO05D008541 1.3e-107 393.7 233 82.8
Carub.0002s1836 Capsella rubella HOM05D006690 ORTHO05D008541 1.7e-107 393.3 294 70.1
CSS0006473 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 2.8e-107 392.5 289 72.0
Haze_13934 Corylus avellana HOM05D006690 ORTHO05D008541 2.8e-107 392.5 231 83.5
CSS0045264 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 3.7e-107 392.1 289 71.6
CiPaw.03G016600 Carya illinoinensis HOM05D006690 ORTHO05D008541 4.8e-107 391.7 234 82.5
PGR042G1281 Punica granatum HOM05D006690 ORTHO05D008541 4.8e-107 391.7 286 72.0
Dinv09402 Davidia involucrata HOM05D006690 ORTHO05D008541 8.2e-107 391.0 233 81.5
AL2G31160 Arabidopsis lyrata HOM05D006690 ORTHO05D008541 1.1e-106 390.6 294 69.0
Glyma.01G231900 Glycine max HOM05D006690 ORTHO05D008541 1.1e-106 390.6 254 76.8
TAR628G1481 Trochodendron aralioides HOM05D006690 ORTHO05D008541 1.4e-106 390.2 272 73.9
AT1G71500 Arabidopsis thaliana HOM05D006690 ORTHO05D008541 2.4e-106 389.4 293 69.6
CARHR291180 Cardamine hirsuta HOM05D006690 ORTHO05D008541 2.4e-106 389.4 294 70.4
Eucgr.F02968 Eucalyptus grandis HOM05D006690 ORTHO05D008541 2.4e-106 389.4 235 80.0
Sp5g26650 Schrenkiella parvula HOM05D006690 ORTHO05D008541 2.4e-106 389.4 293 70.3
GSVIVG01036428001 Vitis vinifera HOM05D006690 ORTHO05D008541 3.1e-106 389.0 282 70.9
VMungo1215G2418 Vigna mungo HOM05D006690 ORTHO05D008541 4.1e-106 388.7 268 75.0
Atru.chr13.2467 Acer truncatum HOM05D006690 ORTHO05D008541 6.9e-106 387.9 290 70.3
MBI06_g35694_MAGBIO Magnolia biondii HOM05D006690 ORTHO05D008541 1.2e-105 387.1 244 79.1
Hma1.2p1_0442F.1_g153970 Hydrangea macrophylla HOM05D006690 ORTHO05D008541 1.5e-105 386.7 233 82.0
QL09p003717 Quercus lobata HOM05D006690 ORTHO05D008541 1.5e-105 386.7 230 83.0
Thhalv10018960m.g Eutrema salsugineum HOM05D006690 ORTHO05D008541 5.9e-105 384.8 294 69.7
TWI75G0001 Tripterygium wilfordii HOM05D006690 ORTHO05D008541 5.9e-105 384.8 239 78.7
THA.LOC104800085 Tarenaya hassleriana HOM05D006690 ORTHO05D008541 1.7e-104 383.3 273 72.5
Lalb_Chr16g0376791 Lupinus albus HOM05D006690 ORTHO05D008541 2.2e-104 382.9 263 74.5
Nn5g27416 Nelumbo nucifera HOM05D006690 ORTHO05D008541 2.2e-104 382.9 245 79.2
PGSC0003DMG400017809 Solanum tuberosum HOM05D006690 ORTHO05D008541 3.8e-104 382.1 268 74.3
BcaC08g46585 Brassica carinata HOM05D006690 ORTHO05D008541 5.0e-104 381.7 289 70.6
C06p45640 Brassica napus HOM05D006690 ORTHO05D008541 5.0e-104 381.7 289 70.6
Nitab4.5_0010632g0010 Nicotiana tabacum HOM05D006690 ORTHO05D008541 5.0e-104 381.7 242 78.1
Sc02g0003840 Simmondsia chinensis HOM05D006690 ORTHO05D008541 5.0e-104 381.7 272 75.7
Nitab4.5_0004761g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 8.5e-104 380.9 234 79.9
Sabra19G0085000 Salix brachista HOM05D006690 ORTHO05D008541 8.5e-104 380.9 314 64.3
AUR62022402 Chenopodium quinoa HOM05D006690 ORTHO05D008541 1.1e-103 380.6 242 77.7
Aa31LG4G9090 Aethionema arabicum HOM05D006690 ORTHO05D008541 1.4e-103 380.2 292 67.8
Sopen11g018800 Solanum pennellii HOM05D006690 ORTHO05D008541 1.9e-103 379.8 273 74.0
CAN.G83.1 Capsicum annuum HOM05D006690 ORTHO05D008541 2.5e-103 379.4 271 72.0
MELO3C022193.2 Cucumis melo HOM05D006690 ORTHO05D008541 2.5e-103 379.4 233 80.7
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 3.2e-103 379.0 269 72.1
BraA07t31340Z Brassica rapa HOM05D006690 ORTHO05D008541 3.2e-103 379.0 269 72.1
CsaV3_5G040160 Cucumis sativus L. HOM05D006690 ORTHO05D008541 4.2e-103 378.6 233 80.7
Solyc11g042640.2 Solanum lycopersicum HOM05D006690 ORTHO05D008541 4.2e-103 378.6 273 73.6
MSTRG.1587 Avicennia marina HOM05D006690 ORTHO05D008541 9.4e-103 377.5 279 69.9
Medtr5g008750 Medicago truncatula HOM05D006690 ORTHO05D008541 9.4e-103 377.5 263 73.4
ClCG08G000730 Citrullus lanatus HOM05D006690 ORTHO05D008541 2.1e-102 376.3 287 70.0
Cc10_g09110 Coffea canephora HOM05D006690 ORTHO05D008541 2.1e-102 376.3 210 87.6
EL10Ac1g01712 Beta vulgaris HOM05D006690 ORTHO05D008541 2.7e-102 375.9 266 72.6
LjContig00222g0026492 Lotus japonicus HOM05D006690 ORTHO05D008541 2.7e-102 375.9 268 72.8
ATR1089G004 Amborella trichopoda HOM05D006690 ORTHO05D008541 3.6e-102 375.6 282 69.9
Psat0s3069g0040 Pisum sativum HOM05D006690 ORTHO05D008541 3.6e-102 375.6 271 70.8
RcHm_v2.0_Chr2g0123251 Rosa chinensis HOM05D006690 ORTHO05D008541 4.7e-102 375.2 295 67.5
SalBow7G1428 Salvia bowleyana HOM05D006690 ORTHO05D008541 4.7e-102 375.2 241 77.6
arahy.Tifrunner.gnm1.ann1.PSIH1X Arachis hypogaea HOM05D006690 ORTHO05D008541 6.1e-102 374.8 313 65.8
AUR62043541 Chenopodium quinoa HOM05D006690 ORTHO05D008541 6.1e-102 374.8 242 76.4
Prupe.1G128000 Prunus persica HOM05D006690 ORTHO05D008541 6.1e-102 374.8 290 70.3
ECA247G0737 Erigeron canadensis HOM05D006690 ORTHO05D008541 1.4e-101 373.6 255 73.3
Ah.05g168760 Amaranthus hybridus HOM05D006690 ORTHO05D008541 5.1e-101 371.7 254 74.4
CDE05G2117 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 6.7e-101 371.3 248 75.8
Lj9A700T90 Lonicera japonica HOM05D006690 ORTHO05D008541 8.8e-101 370.9 273 71.4
CANSAT21G2558 Cannabis sativa HOM05D006690 ORTHO05D008541 1.1e-100 370.5 235 79.1
Ca_24481_v3 Cicer arietinum L. HOM05D006690 ORTHO05D008541 1.1e-100 370.5 282 69.5
HanXRQChr04g0102641 Helianthus annuus HOM05D006690 ORTHO05D008541 1.1e-100 370.5 272 71.7
Peaxi162Scf00078g00341 Petunia axillaris HOM05D006690 ORTHO05D008541 1.1e-100 370.5 274 71.2
Ciclev10021386m.g Citrus clementina HOM05D006690 ORTHO05D008541 1.5e-100 370.2 293 69.3
Sed0015713 Sechium edule HOM05D006690 ORTHO05D008541 3.3e-100 369.0 209 85.2
MD15G1137600 Malus domestica HOM05D006690 ORTHO05D008541 1.3e-99 367.1 298 68.5
FAN19G1869 Fragaria x ananassa HOM05D006690 ORTHO05D008541 1.7e-99 366.7 278 70.9
Rhsim12G0004800 Rhododendron simsii HOM05D006690 ORTHO05D008541 1.7e-99 366.7 268 72.0
Aqoxy5G00849 Aquilegia oxysepala HOM05D006690 ORTHO05D008541 2.8e-99 365.9 273 69.6
DCAR_017362 Daucus carota HOM05D006690 ORTHO05D008541 2.8e-99 365.9 248 75.0
FAN23G3093 Fragaria x ananassa HOM05D006690 ORTHO05D008541 6.3e-99 364.8 281 70.1
FAN28G2783 Fragaria x ananassa HOM05D006690 ORTHO05D008541 6.3e-99 364.8 281 70.1
FAN26G2368 Fragaria x ananassa HOM05D006690 ORTHO05D008541 1.8e-98 363.2 281 69.8
SGA_v2.0_scaffold24G10633 Striga asiatica HOM05D006690 ORTHO05D008541 2.4e-98 362.8 231 77.5
Migut.C01361 Erythranthe guttata HOM05D006690 ORTHO05D008541 5.3e-98 361.7 234 78.2
SGA_v2.0_scaffold118G32591 Striga asiatica HOM05D006690 ORTHO05D008541 7.0e-98 361.3 236 75.0
PSO017G7034 Papaver somniferum HOM05D006690 ORTHO05D008541 3.5e-97 359.0 229 76.4
HPP92_019451 Vanilla planifolia HOM05D006690 ORTHO05D008541 4.5e-97 358.6 234 76.1
Zm00001eb142810 Zea mays HOM05D006690 ORTHO05D008541 4.5e-97 358.6 249 78.3
Lsat_1_v5_gn_1_25180 Lactuca sativa HOM05D006690 ORTHO05D008541 5.9e-97 358.2 231 77.5
Oeu023205.1 Olea europaea HOM05D006690 ORTHO05D008541 3.8e-96 355.5 335 59.1
arahy.Tifrunner.gnm1.ann1.M9KTRI Arachis hypogaea HOM05D006690 ORTHO05D008541 5.0e-96 355.1 313 61.3
PSO170G2989 Papaver somniferum HOM05D006690 ORTHO05D008541 5.0e-96 355.1 229 76.4
unitig_8.g4892 Utricularia gibba HOM05D006690 ORTHO05D008541 4.7e-94 348.6 234 72.2
Phvul.002G035200 Phaseolus vulgaris HOM05D006690 ORTHO05D008541 7.4e-92 341.3 246 72.4
Os11g0242400 Oryza sativa ssp. japonica HOM05D006690 ORTHO05D008541 3.6e-86 322.4 233 66.5
SEGI_25869 Sequoiadendron giganteum HOM05D006690 ORTHO05D008541 2.6e-84 316.2 265 61.5
CDE05G3037 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 3.2e-79 299.3 196 77.6
TPR.G37964 Trifolium pratense HOM05D006690 ORTHO05D008541 6.1e-78 295.0 244 63.5
vmacro22748 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 1.3e-75 287.3 292 57.5
Mapoly0043s0097 Marchantia polymorpha HOM05D006690 ORTHO05D008541 3.5e-73 279.3 202 64.4
Nitab4.5_0003013g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 1.7e-72 276.9 214 67.8
Pp3c6_9090 Physcomitrium patens HOM05D006690 ORTHO05D008541 2.3e-72 276.6 233 59.7
FvH4_1g25280 Fragaria vesca HOM05D006690 ORTHO05D008541 1.9e-71 273.5 214 68.2
SMO139G0118 Selaginella moellendorffii HOM05D006690 ORTHO05D008541 3.0e-69 266.2 202 62.4
CDE05G1864 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 9.2e-66 254.6 178 72.5
AagrBONN_evm.TU.Sc2ySwM_228.501 Anthoceros agrestis HOM05D006690 ORTHO05D008541 2.8e-62 243.0 189 63.5
vmacro00956 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 4.3e-39 166.0 196 49.0
QL09p003724 Quercus lobata HOM05D006690 ORTHO05D008541 3.6e-38 162.9 176 54.0
GSVIVG01034644001 Vitis vinifera HOM05D006690 ORTHO05D008541 2.1e-33 147.1 95 76.8
Cre09.g411200 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D008541 1.5e-31 141.0 186 41.9
MCO14G230 Micromonas commoda HOM05D006690 ORTHO05D008541 5.6e-31 139.0 233 36.1
QL09p003744 Quercus lobata HOM05D006690 ORTHO05D008541 1.4e-29 134.4 93 74.2
PRCOL_00001119 Prasinoderma coloniale HOM05D006690 ORTHO05D008541 5.3e-29 132.5 158 41.8
SGA_v2.0_scaffold7G03910 Striga asiatica HOM05D006690 ORTHO05D008541 1.1e-26 124.8 86 69.8
unitig_578.g16121 Utricularia gibba HOM05D006690 ORTHO05D008541 2.1e-25 120.6 131 46.6
MCO05G575 Micromonas commoda HOM05D006690 ORTHO05D044287 8.7e-08 62.0 114 36.8


User provided reference genes

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