Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G173400 Theobroma cacao HOM05D006696 ORTHO05D008683 0.0e+00 1315.4 639 100.0
Gohir.D13G120600 Gossypium hirsutum HOM05D006696 ORTHO05D008683 0.0e+00 1128.6 643 83.5
Gorai.013G134800 Gossypium raimondii HOM05D006696 ORTHO05D008683 0.0e+00 1126.3 643 83.2
Gohir.A13G117300 Gossypium hirsutum HOM05D006696 ORTHO05D008683 0.0e+00 1119.8 644 82.6
COL.COLO4_24599 Corchorus olitorius HOM05D006696 ORTHO05D008683 0.0e+00 1076.6 609 84.6
Duzib177G0277 Durio zibethinus HOM05D006696 ORTHO05D008683 1.6e-304 1048.9 641 81.4
Manes.01G267400 Manihot esculenta HOM05D006696 ORTHO05D008683 2.9e-290 1001.5 646 73.8
TWI14G1225 Tripterygium wilfordii HOM05D006696 ORTHO05D008683 1.9e-289 998.8 642 76.2
Atru.chr5.281 Acer truncatum HOM05D006696 ORTHO05D008683 2.0e-286 988.8 659 71.9
THA.LOC104814083 Tarenaya hassleriana HOM05D006696 ORTHO05D008683 3.3e-286 988.0 633 74.2
Potri.002G146100 Populus trichocarpa HOM05D006696 ORTHO05D008683 1.2e-283 979.5 638 72.7
Ciclev10019231m.g Citrus clementina HOM05D006696 ORTHO05D008683 4.5e-283 977.6 644 73.3
CiPaw.01G264000 Carya illinoinensis HOM05D006696 ORTHO05D008683 5.0e-282 974.2 645 73.6
Sabra02G0113800 Salix brachista HOM05D006696 ORTHO05D008683 5.0e-282 974.2 638 72.4
Prupe.2G142200 Prunus persica HOM05D006696 ORTHO05D008683 6.5e-282 973.8 652 73.0
Rhsim01G0149400 Rhododendron simsii HOM05D006696 ORTHO05D008683 2.5e-281 971.8 637 72.5
Hma1.2p1_0301F.1_g118560 Hydrangea macrophylla HOM05D006696 ORTHO05D008683 4.2e-281 971.1 576 77.4
MD07G1119000 Malus domestica HOM05D006696 ORTHO05D008683 9.4e-281 969.9 640 72.2
CSS0014714 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 2.1e-280 968.8 587 77.2
CSS0026641 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 3.6e-280 968.0 587 77.0
Haze_16792 Corylus avellana HOM05D006696 ORTHO05D008683 2.2e-277 958.7 648 72.5
Eucgr.D02468 Eucalyptus grandis HOM05D006696 ORTHO05D008683 8.2e-277 956.8 584 77.4
Sopen01g036880 Solanum pennellii HOM05D006696 ORTHO05D008683 1.1e-276 956.4 578 76.6
PGSC0003DMG400025962 Solanum tuberosum HOM05D006696 ORTHO05D008683 1.1e-276 956.4 578 76.6
ClCG05G002380 Citrullus lanatus HOM05D006696 ORTHO05D008683 3.1e-276 954.9 632 73.1
Cc02_g24120 Coffea canephora HOM05D006696 ORTHO05D008683 2.0e-275 952.2 634 72.7
QL08p052869 Quercus lobata HOM05D006696 ORTHO05D008683 2.6e-275 951.8 599 75.8
Solyc01g091130.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 4.5e-275 951.0 578 76.5
Peaxi162Scf00013g03019 Petunia axillaris HOM05D006696 ORTHO05D008683 5.9e-275 950.7 579 76.9
Aa31LG1G11340 Aethionema arabicum HOM05D006696 ORTHO05D008683 7.7e-275 950.3 570 77.4
Nn6g34076 Nelumbo nucifera HOM05D006696 ORTHO05D008683 1.0e-274 949.9 651 71.1
CAN.G388.34 Capsicum annuum HOM05D006696 ORTHO05D008683 1.7e-274 949.1 578 76.5
CsaV3_3G009820 Cucumis sativus L. HOM05D006696 ORTHO05D008683 3.8e-274 948.0 585 75.7
Nitab4.5_0010616g0010 Nicotiana tabacum HOM05D006696 ORTHO05D008683 1.6e-272 942.6 651 69.0
RcHm_v2.0_Chr1g0349711 Rosa chinensis HOM05D006696 ORTHO05D008683 2.7e-272 941.8 635 69.8
MELO3C006203.2 Cucumis melo HOM05D006696 ORTHO05D008683 8.0e-272 940.3 623 72.1
Lj7C531T6 Lonicera japonica HOM05D006696 ORTHO05D008683 1.1e-270 936.4 583 74.6
Nitab4.5_0000457g0140 Nicotiana tabacum HOM05D006696 ORTHO05D008683 1.1e-270 936.4 640 70.8
vmacro21023 Vaccinium macrocarpon HOM05D006696 ORTHO05D008683 1.5e-270 936.0 718 64.6
arahy.Tifrunner.gnm1.ann1.30BUB6 Arachis hypogaea HOM05D006696 ORTHO05D008683 2.0e-270 935.6 582 75.3
TAR629G0060 Trochodendron aralioides HOM05D006696 ORTHO05D008683 2.0e-270 935.6 587 74.8
Lalb_Chr07g0189961 Lupinus albus HOM05D006696 ORTHO05D008683 3.3e-270 934.9 628 71.8
arahy.Tifrunner.gnm1.ann1.PBYD8I Arachis hypogaea HOM05D006696 ORTHO05D008683 9.7e-270 933.3 582 74.9
Ca_19926_v3 Cicer arietinum L. HOM05D006696 ORTHO05D008683 1.3e-269 932.9 584 74.7
VMungo0331G0021 Vigna mungo HOM05D006696 ORTHO05D008683 2.2e-269 932.2 577 74.7
Glyma.03G028100 Glycine max HOM05D006696 ORTHO05D008683 1.4e-268 929.5 576 74.3
AUR62004189 Chenopodium quinoa HOM05D006696 ORTHO05D008683 3.1e-268 928.3 636 70.9
Hund27369 Selenicereus undatus HOM05D006696 ORTHO05D008683 9.1e-268 926.8 581 74.0
Lsat_1_v5_gn_3_132380 Lactuca sativa HOM05D006696 ORTHO05D008683 1.6e-267 926.0 579 73.4
Psat7g231000 Pisum sativum HOM05D006696 ORTHO05D008683 2.7e-267 925.2 574 75.3
Medtr4g025130 Medicago truncatula HOM05D006696 ORTHO05D008683 3.5e-267 924.9 653 69.4
EL10Ac1g00866 Beta vulgaris HOM05D006696 ORTHO05D008683 1.0e-266 923.3 587 73.6
Sed0011228 Sechium edule HOM05D006696 ORTHO05D008683 1.3e-266 922.9 641 69.9
HanXRQChr03g0093971 Helianthus annuus HOM05D006696 ORTHO05D008683 2.2e-266 922.2 576 73.4
Ah.05g174590 Amaranthus hybridus HOM05D006696 ORTHO05D008683 2.9e-266 921.8 587 72.7
TPR.G7586 Trifolium pratense HOM05D006696 ORTHO05D008683 2.9e-266 921.8 590 73.6
Phvul.010G081400 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 1.9e-265 919.1 630 71.0
FAN01G1519 Fragaria x ananassa HOM05D006696 ORTHO05D008683 5.5e-265 917.5 620 69.8
FvH4_7g11430 Fragaria vesca HOM05D006696 ORTHO05D008683 2.1e-264 915.6 620 69.7
FAN06G3694 Fragaria x ananassa HOM05D006696 ORTHO05D008683 8.0e-264 913.7 620 69.7
FAN06G1977 Fragaria x ananassa HOM05D006696 ORTHO05D008683 3.0e-263 911.8 620 69.5
Aqoxy7G00691 Aquilegia oxysepala HOM05D006696 ORTHO05D008683 9.8e-262 906.7 646 68.6
SGA_v2.0_scaffold95G28911 Striga asiatica HOM05D006696 ORTHO05D008683 3.7e-261 904.8 623 69.0
FAN03G1153 Fragaria x ananassa HOM05D006696 ORTHO05D008683 6.3e-261 904.0 620 68.2
MSTRG.20736 Avicennia marina HOM05D006696 ORTHO05D008683 1.4e-260 902.9 628 68.6
Migut.B01614 Erythranthe guttata HOM05D006696 ORTHO05D008683 7.0e-260 900.6 627 68.6
Sp1g37340 Schrenkiella parvula HOM05D006696 ORTHO05D008683 3.5e-259 898.3 624 71.5
Cpa.g.sc611.2 Carica papaya HOM05D006696 ORTHO05D008683 2.2e-258 895.6 544 77.4
ECA232G1408 Erigeron canadensis HOM05D006696 ORTHO05D008683 5.5e-257 891.0 577 70.9
unitig_22.g5383 Utricularia gibba HOM05D006696 ORTHO05D008683 7.2e-257 890.6 580 71.9
MBI12_g20403_MAGBIO Magnolia biondii HOM05D006696 ORTHO05D008683 8.8e-255 883.6 580 71.9
AL1G10260 Arabidopsis lyrata HOM05D006696 ORTHO05D008683 5.4e-252 874.4 569 73.5
AT1G02020 Arabidopsis thaliana HOM05D006696 ORTHO05D008683 8.6e-250 867.1 570 72.8
C06p05680 Brassica napus HOM05D006696 ORTHO05D008683 1.5e-249 866.3 615 70.1
PSO782G1103 Papaver somniferum HOM05D006696 ORTHO05D008683 5.6e-249 864.4 572 71.7
BcaB07g33486 Brassica carinata HOM05D006696 ORTHO05D008683 7.3e-249 864.0 612 70.1
PSO478G1798 Papaver somniferum HOM05D006696 ORTHO05D008683 9.5e-249 863.6 572 71.7
Carub.0001s0021 Capsella rubella HOM05D006696 ORTHO05D008683 4.7e-248 861.3 571 71.6
Lj3g0014279 Lotus japonicus HOM05D006696 ORTHO05D008683 8.0e-248 860.5 606 70.3
BcaC08g43220 Brassica carinata HOM05D006696 ORTHO05D008683 8.9e-247 857.1 615 69.6
BolC6t35679H Brassica oleracea HOM05D006696 ORTHO05D008683 8.9e-247 857.1 615 69.6
A06p03080 Brassica napus HOM05D006696 ORTHO05D008683 1.5e-246 856.3 611 70.0
Sc26g0001290 Simmondsia chinensis HOM05D006696 ORTHO05D008683 1.4e-244 849.7 554 71.8
Thhalv10007140m.g Eutrema salsugineum HOM05D006696 ORTHO05D008683 1.2e-243 846.7 590 69.8
GSVIVG01027661001 Vitis vinifera HOM05D006696 ORTHO05D008683 2.7e-243 845.5 579 70.1
BraA06t23521Z Brassica rapa HOM05D006696 ORTHO05D008683 1.9e-241 839.3 609 69.8
CDE04G1815 Ceratophyllum demersum HOM05D006696 ORTHO05D008683 7.3e-241 837.4 588 68.5
SalBow5G3816 Salvia bowleyana HOM05D006696 ORTHO05D008683 3.4e-238 828.6 567 69.1
HPP92_022287 Vanilla planifolia HOM05D006696 ORTHO05D008683 2.4e-236 822.4 642 63.4
AUR62013656 Chenopodium quinoa HOM05D006696 ORTHO05D008683 3.2e-220 768.8 573 65.4
Actinidia33475 Actinidia chinensis HOM05D006696 ORTHO05D008683 6.2e-216 754.6 623 61.0
ATR0041G020 Amborella trichopoda HOM05D006696 ORTHO05D008683 1.9e-212 743.0 571 63.4
SEGI_31859 Sequoiadendron giganteum HOM05D006696 ORTHO05D008683 2.9e-197 692.6 544 61.4
Os10g0190800 Oryza sativa ssp. japonica HOM05D006696 ORTHO05D008683 6.4e-197 691.4 580 59.5
SMO011G0006 Selaginella moellendorffii HOM05D006696 ORTHO05D008683 1.4e-196 690.3 581 59.2
CARHR000330 Cardamine hirsuta HOM05D006696 ORTHO05D008683 5.3e-191 671.8 474 67.5
Zm00001eb145800 Zea mays HOM05D006696 ORTHO05D008683 1.9e-188 663.3 578 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1723 Anthoceros agrestis HOM05D006696 ORTHO05D008683 1.9e-180 636.7 591 54.5
Mapoly0117s0009 Marchantia polymorpha HOM05D006696 ORTHO05D008683 2.2e-176 623.2 587 54.7
Pp3c18_8320 Physcomitrium patens HOM05D006696 ORTHO05D008683 1.0e-173 614.4 571 53.8
DCAR_015916 Daucus carota HOM05D006696 ORTHO05D008683 1.4e-164 583.9 374 70.9
Solyc01g091140.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 3.5e-142 509.6 528 52.1
Dinv32364 Davidia involucrata HOM05D006696 ORTHO05D008683 5.2e-122 442.6 255 79.2
CANSAT21G0759 Cannabis sativa HOM05D006696 ORTHO05D008683 2.4e-95 354.0 210 76.7
Oeu037929.1 Olea europaea HOM05D006696 ORTHO05D008683 1.1e-76 292.0 195 70.8
SGA_v2.0_scaffold581G53050 Striga asiatica HOM05D006696 ORTHO05D008683 2.3e-69 267.7 197 64.0
Sopen01g036900 Solanum pennellii HOM05D006696 ORTHO05D008683 2.9e-64 250.8 221 59.3
CARHR000320 Cardamine hirsuta HOM05D006696 ORTHO05D008683 2.9e-48 197.6 107 81.3
Atru.chr4.660 Acer truncatum HOM05D006696 ORTHO05D030753 2.7e-46 191.0 134 63.4
Zm00001eb027220 Zea mays HOM05D006696 ORTHO05D008683 1.1e-26 125.9 101 54.5
Sopen01g036890 Solanum pennellii HOM05D006696 ORTHO05D008683 1.4e-26 125.6 80 72.5
VMungo0720G2385 Vigna mungo HOM05D006696 ORTHO05D008683 3.8e-24 117.5 65 76.9
VMungo1309G0520 Vigna mungo HOM05D006696 ORTHO05D008683 6.1e-22 110.2 65 73.8
Phvul.010G066778 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 1.3e-16 92.4 73 63.0
Cpa.g.sc14.75 Carica papaya HOM05D006696 ORTHO05D008683 1.0e-13 82.8 37 97.3
SalBow5G1567 Salvia bowleyana HOM05D006696 ORTHO05D008683 3.0e-13 81.3 43 81.4
Atru.chr4.903 Acer truncatum HOM05D006696 ORTHO05D030753 3.7e-11 74.3 39 84.6
Lsat_1_v5_gn_8_142581 Lactuca sativa HOM05D006696 ORTHO05D030753 3.7e-11 74.3 133 36.8
Zm00001eb027230 Zea mays HOM05D006696 ORTHO05D008683 3.3e-07 61.2 71 53.5


User provided reference genes

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