Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 9.2e-64 246.9 140 100.0
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 2.6e-58 228.8 141 92.9
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 1.1e-56 223.4 140 93.6
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 2.4e-56 222.2 140 92.9
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 2.3e-54 215.7 140 90.0
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 6.8e-51 204.1 140 85.7
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 9.9e-50 200.3 140 83.6
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 1.1e-48 196.8 140 85.0
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 1.6e-47 193.0 142 81.0
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 2.1e-47 192.6 139 78.4
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 1.7e-46 189.5 143 79.7
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 1.5e-45 186.4 143 79.0
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 1.2e-44 183.3 141 69.5
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 3.6e-44 181.8 140 79.3
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 8.1e-44 180.6 136 77.2
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 8.1e-44 180.6 140 68.6
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 8.1e-44 180.6 140 68.6
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 8.1e-44 180.6 136 82.4
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 1.1e-43 180.3 140 68.6
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 1.1e-43 180.3 140 68.6
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 1.4e-43 179.9 140 77.9
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 2.4e-43 179.1 136 80.9
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 5.2e-43 177.9 136 66.2
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 5.2e-43 177.9 139 67.6
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 5.2e-43 177.9 144 76.4
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 6.9e-43 177.6 137 67.9
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 8.9e-43 177.2 141 78.0
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 1.2e-42 176.8 141 78.0
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 2.0e-42 176.0 136 70.6
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 2.6e-42 175.6 140 62.9
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 2.6e-42 175.6 115 92.2
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 2.6e-42 175.6 141 78.0
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 4.4e-42 174.9 137 73.7
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 5.8e-42 174.5 140 62.9
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 5.8e-42 174.5 139 79.1
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 9.9e-42 173.7 139 66.9
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 9.9e-42 173.7 136 68.4
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.2e-41 172.6 142 75.4
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 2.2e-41 172.6 141 64.5
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 2.2e-41 172.6 143 77.6
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 2.9e-41 172.2 136 67.6
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 2.9e-41 172.2 144 66.7
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 2.9e-41 172.2 144 66.7
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 3.8e-41 171.8 136 67.6
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 4.9e-41 171.4 137 67.9
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 4.9e-41 171.4 137 67.9
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 4.9e-41 171.4 143 76.2
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 8.4e-41 170.6 139 74.1
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.4e-40 169.9 142 76.1
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 1.9e-40 169.5 141 63.1
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 3.2e-40 168.7 138 63.8
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 5.4e-40 167.9 135 65.9
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 7.1e-40 167.5 140 75.7
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 9.3e-40 167.2 136 77.2
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 1.2e-39 166.8 133 76.7
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 1.2e-39 166.8 136 75.0
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 1.2e-39 166.8 139 76.3
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 2.1e-39 166.0 142 62.7
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.1e-39 166.0 142 62.7
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.7e-39 165.6 144 72.9
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 2.7e-39 165.6 136 76.5
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.7e-39 165.6 142 62.7
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 3.5e-39 165.2 138 64.5
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 3.5e-39 165.2 140 64.3
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 4.6e-39 164.9 136 70.6
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 4.6e-39 164.9 138 73.2
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 6.0e-39 164.5 143 72.7
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 6.0e-39 164.5 140 77.1
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 7.8e-39 164.1 137 74.5
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 7.8e-39 164.1 143 64.3
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.7e-38 162.9 142 62.0
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 2.3e-38 162.5 136 75.0
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 2.3e-38 162.5 140 70.7
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 3.0e-38 162.2 138 72.5
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 6.6e-38 161.0 140 70.0
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 1.1e-37 160.2 136 73.5
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 1.9e-37 159.5 140 71.4
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 2.5e-37 159.1 138 71.7
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 4.3e-37 158.3 147 61.9
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 5.6e-37 157.9 138 73.2
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 5.6e-37 157.9 141 61.7
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 5.6e-37 157.9 139 72.7
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 7.3e-37 157.5 138 62.3
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 1.6e-36 156.4 142 57.7
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 3.6e-36 155.2 142 59.9
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 5.3e-35 151.4 139 71.9
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 2.6e-34 149.1 115 73.9
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 4.9e-33 144.8 142 54.2
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 3.2e-32 142.1 152 50.7
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 1.9e-29 132.9 99 84.8
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 3.3e-29 132.1 140 55.7
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 2.9e-25 119.0 112 68.8
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 3.2e-24 115.5 116 58.6
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 1.6e-23 113.2 140 48.6
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 3.5e-23 112.1 132 48.5
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 4.6e-23 111.7 150 50.7
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 1.8e-22 109.8 119 60.5
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 5.1e-22 108.2 96 64.6
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 1.3e-20 103.6 141 50.4
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 2.8e-20 102.4 117 43.6
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 3.7e-20 102.1 77 67.5
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 1.8e-19 99.8 113 61.9
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 5.3e-19 98.2 140 45.0
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 6.9e-19 97.8 80 65.0
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 1.5e-18 96.7 73 65.8
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 1.5e-18 96.7 140 40.7
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 6.5e-17 91.3 119 43.7
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 1.4e-16 90.1 124 37.1
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 4.6e-15 85.1 129 36.4
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 1.8e-14 83.2 92 53.3
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 6.7e-14 81.3 69 59.4
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 1.1e-13 80.5 70 61.4
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 1.1e-13 80.5 77 50.6
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 2.4e-11 72.8 50 68.0
Zm00001eb223600 Zea mays HOM05D002538 ORTHO05D008191 6.5e-09 64.7 79 46.8
Zm00001eb351370 Zea mays HOM05D002538 ORTHO05D003162 1.1e-08 63.9 79 45.6
Zm00001eb166970 Zea mays HOM05D002538 ORTHO05D003162 1.4e-08 63.5 79 45.6
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 3.2e-08 62.4 75 46.7
Zm00001eb359390 Zea mays HOM05D006738 ORTHO05D008191 3.2e-08 62.4 82 45.1
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 9.3e-08 60.8 66 53.0


User provided reference genes

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