Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G169400 Theobroma cacao HOM05D002370 ORTHO05D037785 6.8e-73 277.3 149 100.0
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 7.3e-27 124.4 120 65.0
Thecc.01G281900 Theobroma cacao HOM05D002370 ORTHO05D037785 4.7e-26 121.7 121 63.6
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.0e-25 118.6 120 62.5
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 4.0e-25 118.6 120 62.5
Thecc.06G048300 Theobroma cacao HOM05D002370 ORTHO05D037785 6.9e-25 117.9 120 61.7
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 9.0e-25 117.5 120 61.7
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 2.6e-24 115.9 120 61.7
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 3.0e-20 102.4 142 48.6
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 5.1e-20 101.7 120 54.2
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 1.1e-19 100.5 120 52.5
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 2.5e-19 99.4 120 51.7
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 3.3e-19 99.0 63 85.7
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 7.3e-19 97.8 142 47.9
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 1.3e-18 97.1 142 47.2
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 2.8e-18 95.9 142 47.2
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 3.6e-18 95.5 120 51.7
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 4.8e-18 95.1 142 45.8
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 4.8e-18 95.1 142 45.8
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 1.1e-17 94.0 120 51.7
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.1e-17 94.0 117 53.8
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.4e-17 93.6 120 54.2
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.4e-17 93.6 120 54.2
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.4e-17 93.6 117 53.8
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 1.4e-17 93.6 142 45.1
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 2.4e-17 92.8 120 50.0
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 3.1e-17 92.4 142 44.4
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 5.3e-17 91.7 121 47.9
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 5.3e-17 91.7 119 50.4
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 5.3e-17 91.7 120 53.3
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 5.3e-17 91.7 120 51.7
Haze_10320 Corylus avellana HOM05D002370 ORTHO05D003878 6.9e-17 91.3 120 48.3
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 9.0e-17 90.9 119 51.3
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.2e-16 90.5 120 50.8
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 1.5e-16 90.1 119 48.7
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 2.6e-16 89.4 119 49.6
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 3.4e-16 89.0 120 48.3
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 4.5e-16 88.6 120 51.7
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 5.8e-16 88.2 142 41.5
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 7.6e-16 87.8 120 48.3
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 7.6e-16 87.8 119 48.7
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 7.6e-16 87.8 119 48.7
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 7.6e-16 87.8 119 48.7
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 7.6e-16 87.8 119 48.7
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 7.6e-16 87.8 142 43.7
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 9.9e-16 87.4 120 47.5
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 1.3e-15 87.0 142 44.4
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 1.3e-15 87.0 142 44.4
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.3e-15 87.0 138 45.7
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.7e-15 86.7 119 47.9
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 1.7e-15 86.7 120 48.3
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 2.9e-15 85.9 120 48.3
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 2.9e-15 85.9 120 48.3
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.8e-15 85.5 120 49.2
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 3.8e-15 85.5 120 48.3
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 6.4e-15 84.7 120 48.3
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 6.4e-15 84.7 120 50.0
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 8.4e-15 84.3 146 40.4
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 1.1e-14 84.0 142 42.3
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.4e-14 83.6 120 46.7
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 1.4e-14 83.6 138 44.2
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 2.4e-14 82.8 120 47.5
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 2.4e-14 82.8 120 45.8
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 4.2e-14 82.0 120 46.7
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 4.2e-14 82.0 120 49.2
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 4.2e-14 82.0 120 45.0
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 5.4e-14 81.6 120 45.8
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 5.4e-14 81.6 120 45.8
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 7.1e-14 81.3 120 45.8
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 7.1e-14 81.3 120 45.8
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 7.1e-14 81.3 120 45.8
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 7.1e-14 81.3 121 47.1
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 9.3e-14 80.9 120 46.7
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.2e-13 80.5 120 46.7
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 1.2e-13 80.5 138 42.0
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.6e-13 80.1 120 45.0
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 1.6e-13 80.1 121 46.3
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 1.6e-13 80.1 121 46.3
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 2.1e-13 79.7 138 42.0
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 2.7e-13 79.3 120 45.0
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 2.7e-13 79.3 120 46.7
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 2.7e-13 79.3 120 45.0
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 3.5e-13 79.0 120 46.7
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 4.6e-13 78.6 120 45.0
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 4.6e-13 78.6 120 46.7
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 4.6e-13 78.6 120 50.0
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 7.9e-13 77.8 120 44.2
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 1.0e-12 77.4 120 43.3
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 1.0e-12 77.4 120 43.3
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 1.3e-12 77.0 115 47.8
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 2.3e-12 76.3 122 46.7
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 3.0e-12 75.9 120 42.5
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 3.0e-12 75.9 120 42.5
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 3.9e-12 75.5 115 47.0
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 3.9e-12 75.5 120 46.7
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 5.1e-12 75.1 120 43.3
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 5.1e-12 75.1 120 42.5
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 6.7e-12 74.7 120 42.5
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 6.7e-12 74.7 120 44.2
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.1e-11 73.9 129 43.4
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 1.1e-11 73.9 116 45.7
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 1.5e-11 73.6 120 42.5
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.9e-11 73.2 120 42.5
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 2.5e-11 72.8 120 42.5
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 2.5e-11 72.8 120 42.5
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 2.5e-11 72.8 120 42.5
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 2.5e-11 72.8 114 45.6
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 3.3e-11 72.4 120 42.5
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 3.3e-11 72.4 120 43.3
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 5.6e-11 71.6 120 45.0
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 9.6e-11 70.9 120 44.2
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.3e-10 70.5 120 40.8
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 1.3e-10 70.5 120 41.7
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 1.6e-10 70.1 120 40.8
CAN.G411.104 Capsicum annuum HOM05D002370 ORTHO05D003878 1.6e-10 70.1 120 41.7
CAN.G411.96 Capsicum annuum HOM05D002370 ORTHO05D003878 2.8e-10 69.3 120 41.7
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 4.8e-10 68.6 120 40.8
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 8.1e-10 67.8 144 38.2
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 8.1e-10 67.8 118 39.8
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 8.1e-10 67.8 142 35.9
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.4e-09 67.0 118 39.0
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 1.8e-09 66.6 120 40.8
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 1.8e-09 66.6 120 40.0
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 3.1e-09 65.9 116 44.0
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 6.9e-09 64.7 114 40.4
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 9.0e-09 64.3 116 43.1
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.5e-08 63.5 120 40.8
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 2.0e-08 63.2 141 36.9
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 2.6e-08 62.8 46 73.9
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 3.4e-08 62.4 117 39.3
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 4.5e-08 62.0 116 39.7
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 3.8e-07 58.9 116 37.1
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 8.4e-07 57.8 120 39.2


User provided reference genes

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