Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 1.8e-151 539.3 284 100.0
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 5.9e-102 374.8 284 71.8
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 1.3e-101 373.6 284 71.8
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 7.5e-89 331.3 281 60.1
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 1.0e-85 320.9 284 63.7
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 7.3e-84 314.7 281 57.3
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 2.3e-82 309.7 279 59.1
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 2.6e-81 306.2 279 59.1
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 5.8e-81 305.1 283 57.6
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 2.4e-79 299.7 279 58.1
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 9.2e-79 297.7 281 53.7
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 2.3e-77 293.1 281 54.8
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 1.1e-76 290.8 282 56.7
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.3e-76 289.3 281 53.0
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 2.1e-75 286.6 281 55.2
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 2.8e-75 286.2 281 51.6
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.8e-75 286.2 281 52.0
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 2.3e-74 283.1 209 74.2
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 8.9e-74 281.2 283 55.8
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 5.8e-73 278.5 274 55.1
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 1.7e-72 276.9 263 56.3
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 1.2e-70 270.8 324 49.1
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 2.1e-70 270.0 282 52.1
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 2.7e-70 269.6 279 52.3
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.5e-70 269.2 289 49.1
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 3.5e-70 269.2 284 49.3
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 1.3e-69 267.3 263 55.5
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 5.1e-69 265.4 281 52.7
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 9.6e-68 261.2 280 51.4
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 9.6e-68 261.2 263 52.9
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 6.2e-67 258.5 288 50.7
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 8.1e-67 258.1 288 49.7
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 1.4e-66 257.3 281 48.8
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 6.8e-66 255.0 273 51.6
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 7.6e-65 251.5 281 47.7
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 4.2e-63 245.7 352 47.7
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 4.2e-63 245.7 279 48.7
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 1.6e-62 243.8 282 48.6
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 2.1e-62 243.4 274 49.3
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 2.7e-62 243.0 282 48.9
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 7.8e-62 241.5 349 45.6
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 1.7e-61 240.4 274 47.1
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 2.3e-61 240.0 263 50.6
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 2.3e-61 240.0 281 49.5
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 2.5e-60 236.5 287 47.4
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 1.8e-58 230.3 282 48.2
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 9.0e-58 228.0 333 42.0
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 1.5e-57 227.3 282 46.5
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 7.6e-57 224.9 283 45.6
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 9.9e-57 224.6 281 45.2
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 2.2e-56 223.4 281 46.3
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 3.8e-56 222.6 282 43.3
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 6.4e-56 221.9 329 41.6
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 8.4e-56 221.5 281 44.5
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 8.4e-56 221.5 281 44.8
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 1.9e-55 220.3 281 44.1
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 2.4e-55 219.9 281 45.2
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 3.2e-55 219.5 279 44.8
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 1.2e-54 217.6 297 44.1
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 1.6e-54 217.2 281 44.8
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 5.1e-53 212.2 264 45.8
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.9e-52 210.3 287 42.5
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 2.1e-51 206.8 306 41.5
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 3.6e-51 206.1 288 44.4
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 8.1e-51 204.9 301 43.5
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 8.1e-51 204.9 301 43.5
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 2.4e-50 203.4 306 41.2
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 1.2e-49 201.1 223 50.2
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.2e-49 201.1 287 41.5
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 7.6e-49 198.4 266 42.1
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 6.4e-48 195.3 223 48.9
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 1.9e-47 193.7 311 40.2
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 2.7e-46 189.9 163 59.5
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 1.6e-43 180.6 318 36.8
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 4.0e-42 176.0 251 40.2
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 3.4e-41 172.9 208 46.2
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 3.4e-41 172.9 164 54.9
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 4.5e-41 172.6 281 37.7
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 6.5e-40 168.7 212 47.6
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 4.2e-39 166.0 281 38.4
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 4.3e-36 156.0 247 38.9
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 1.3e-35 154.5 130 61.5
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 2.4e-34 150.2 279 33.0
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 3.1e-34 149.8 142 57.7
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 6.9e-34 148.7 236 36.9
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 6.9e-34 148.7 281 32.0
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 4.5e-33 146.0 136 58.1
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 5.9e-33 145.6 128 59.4
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 2.2e-32 143.7 128 60.9
Duzib116G0864 Durio zibethinus HOM05D006511 ORTHO05D007567 1.9e-31 140.6 130 61.5
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 4.6e-30 136.0 201 42.3
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 3.9e-29 132.9 190 37.9
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 1.9e-28 130.6 281 32.4
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 3.3e-28 129.8 264 35.2
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 8.2e-27 125.2 147 49.0
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 8.2e-27 125.2 129 48.8
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 2.4e-26 123.6 160 46.9
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 6.9e-26 122.1 235 34.5
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 9.0e-26 121.7 268 32.5
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 4.5e-25 119.4 192 37.0
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 1.0e-24 118.2 210 36.7
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 3.8e-24 116.3 281 30.2
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 6.5e-24 115.5 142 46.5
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 1.9e-23 114.0 114 50.9
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 6.1e-22 109.0 100 55.0
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 7.9e-22 108.6 135 43.7
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.4e-21 107.8 107 52.3
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 3.0e-21 106.7 111 45.9
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 2.6e-20 103.6 281 27.8
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 4.3e-20 102.8 80 66.2
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 5.7e-20 102.4 98 51.0
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 3.4e-17 93.2 101 49.5
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 7.7e-17 92.0 84 53.6
Lsat_1_v5_gn_0_19000 Lactuca sativa HOM05D006511 ORTHO05D007567 3.7e-11 73.2 118 38.1
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.8e-10 70.9 55 56.4
SMO137G0232 Selaginella moellendorffii HOM05D006511 ORTHO05D007567 2.0e-09 67.4 125 25.6
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 1.3e-08 64.7 63 47.6
Haze_13999 Corylus avellana HOM05D006511 ORTHO05D007567 2.5e-07 60.5 55 52.7
Lalb_Chr19g0131881 Lupinus albus HOM05D006511 ORTHO05D007567 3.2e-07 60.1 45 62.2
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 5.5e-07 59.3 56 46.4


User provided reference genes

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