Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G163900 Theobroma cacao HOM05D002688 ORTHO05D002911 6.1e-82 307.4 150 100.0
Thecc.04G310300 Theobroma cacao HOM05D002688 ORTHO05D002911 4.6e-37 158.3 131 66.4
COL.COLO4_34543 Corchorus olitorius HOM05D002688 ORTHO05D002911 7.6e-32 141.0 127 59.1
Duzib151G1114 Durio zibethinus HOM05D002688 ORTHO05D002911 1.7e-31 139.8 135 57.8
Gohir.A02G057300 Gossypium hirsutum HOM05D002688 ORTHO05D002911 4.9e-31 138.3 135 56.3
Gohir.D02G063100 Gossypium hirsutum HOM05D002688 ORTHO05D002911 4.9e-31 138.3 135 56.3
Gorai.005G071000 Gossypium raimondii HOM05D002688 ORTHO05D002911 3.5e-29 132.1 131 55.7
Lj6g0010362 Lotus japonicus HOM05D002688 ORTHO05D002911 6.9e-25 117.9 134 46.3
Ciclev10005764m.g Citrus clementina HOM05D002688 ORTHO05D002911 1.0e-23 114.0 133 46.6
QL06p013820 Quercus lobata HOM05D002688 ORTHO05D002911 1.0e-23 114.0 133 48.1
VMungo1309G1436 Vigna mungo HOM05D002688 ORTHO05D002911 1.7e-23 113.2 127 44.9
MD13G1144200 Malus domestica HOM05D002688 ORTHO05D002911 2.9e-23 112.5 125 47.2
Atru.chr4.3128 Acer truncatum HOM05D002688 ORTHO05D002911 6.5e-23 111.3 134 45.5
Prupe.1G108600 Prunus persica HOM05D002688 ORTHO05D002911 8.4e-23 110.9 135 45.9
Phvul.009G242300 Phaseolus vulgaris HOM05D002688 ORTHO05D002911 1.1e-22 110.5 128 46.9
Glyma.15G157700 Glycine max HOM05D002688 ORTHO05D002911 1.9e-22 109.8 124 45.2
Manes.15G003900 Manihot esculenta HOM05D002688 ORTHO05D002911 2.5e-22 109.4 129 48.1
THA.LOC104824724 Tarenaya hassleriana HOM05D002688 ORTHO05D002911 5.5e-22 108.2 130 47.7
TPR.G31843 Trifolium pratense HOM05D002688 ORTHO05D002911 7.1e-22 107.8 128 44.5
Ca_01993_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 1.2e-21 107.1 128 45.3
arahy.Tifrunner.gnm1.ann1.00A31M Arachis hypogaea HOM05D002688 ORTHO05D002911 2.1e-21 106.3 125 47.2
arahy.Tifrunner.gnm1.ann1.4SUD33 Arachis hypogaea HOM05D002688 ORTHO05D002911 2.1e-21 106.3 125 47.2
RcHm_v2.0_Chr4g0426751 Rosa chinensis HOM05D002688 ORTHO05D002911 2.1e-21 106.3 129 46.5
FvH4_4g21180 Fragaria vesca HOM05D002688 ORTHO05D002911 6.0e-21 104.8 129 46.5
FAN17G2002 Fragaria x ananassa HOM05D002688 ORTHO05D002911 6.0e-21 104.8 129 46.5
FAN07G1777 Fragaria x ananassa HOM05D002688 ORTHO05D002911 7.9e-21 104.4 129 45.7
CiPaw.01G131000 Carya illinoinensis HOM05D002688 ORTHO05D002911 1.0e-20 104.0 129 46.5
Lalb_Chr20g0114281 Lupinus albus HOM05D002688 ORTHO05D002911 1.0e-20 104.0 127 44.1
Psat5g074720 Pisum sativum HOM05D002688 ORTHO05D002911 1.0e-20 104.0 125 43.2
Ah.03g136450 Amaranthus hybridus HOM05D002688 ORTHO05D002911 1.8e-20 103.2 125 47.2
Lalb_Chr15g0083771 Lupinus albus HOM05D002688 ORTHO05D002911 3.0e-20 102.4 127 42.5
Medtr2g035820 Medicago truncatula HOM05D002688 ORTHO05D002911 3.0e-20 102.4 128 43.8
CARHR092690 Cardamine hirsuta HOM05D002688 ORTHO05D002911 6.7e-20 101.3 129 45.7
Potri.010G153200 Populus trichocarpa HOM05D002688 ORTHO05D002911 6.7e-20 101.3 125 44.8
Sc19g0002130 Simmondsia chinensis HOM05D002688 ORTHO05D002911 6.7e-20 101.3 130 46.2
AT3G17365 Arabidopsis thaliana HOM05D002688 ORTHO05D002911 1.1e-19 100.5 129 44.2
BcaC09g48692 Brassica carinata HOM05D002688 ORTHO05D002911 1.1e-19 100.5 129 44.2
BolC1t04660H Brassica oleracea HOM05D002688 ORTHO05D002911 1.1e-19 100.5 129 44.2
CsaV3_3G015470 Cucumis sativus L. HOM05D002688 ORTHO05D002911 1.1e-19 100.5 129 40.3
MELO3C006746.2 Cucumis melo HOM05D002688 ORTHO05D002911 1.5e-19 100.1 126 42.9
BcaB04g20847 Brassica carinata HOM05D002688 ORTHO05D002911 1.9e-19 99.8 129 47.3
Sed0026277 Sechium edule HOM05D002688 ORTHO05D002911 3.3e-19 99.0 129 40.3
Hund22622 Selenicereus undatus HOM05D002688 ORTHO05D002911 3.3e-19 99.0 130 43.1
AL3G30430 Arabidopsis lyrata HOM05D002688 ORTHO05D002911 4.3e-19 98.6 129 44.2
GSVIVG01017672001 Vitis vinifera HOM05D002688 ORTHO05D002911 4.3e-19 98.6 125 45.6
A03p40150 Brassica napus HOM05D002688 ORTHO05D002911 5.7e-19 98.2 129 44.2
TAR362G0783 Trochodendron aralioides HOM05D002688 ORTHO05D002911 5.7e-19 98.2 128 46.9
A01p36980 Brassica napus HOM05D002688 ORTHO05D001194 7.4e-19 97.8 124 48.4
BraA01t03758Z Brassica rapa HOM05D002688 ORTHO05D002911 7.4e-19 97.8 124 48.4
PSO170G2192 Papaver somniferum HOM05D002688 ORTHO05D002911 9.7e-19 97.4 129 44.2
Sp3g15540 Schrenkiella parvula HOM05D002688 ORTHO05D002911 1.3e-18 97.1 129 43.4
C01p46880 Brassica napus HOM05D002688 ORTHO05D002911 1.6e-18 96.7 124 45.2
Nn3g21877 Nelumbo nucifera HOM05D002688 ORTHO05D002911 2.2e-18 96.3 129 47.3
Aqoxy5G02770 Aquilegia oxysepala HOM05D002688 ORTHO05D002911 2.8e-18 95.9 133 42.1
C03p48770 Brassica napus HOM05D002688 ORTHO05D002911 2.8e-18 95.9 129 44.2
Lj6A699T65 Lonicera japonica HOM05D002688 ORTHO05D002911 3.7e-18 95.5 125 47.2
BolC3t17159H Brassica oleracea HOM05D002688 ORTHO05D002911 6.3e-18 94.7 139 42.4
Eucgr.H04109 Eucalyptus grandis HOM05D002688 ORTHO05D002911 6.3e-18 94.7 124 46.8
BcaB04g18938 Brassica carinata HOM05D002688 ORTHO05D002911 8.2e-18 94.4 139 42.4
CSS0024323 Camellia sinensis var. sinensis HOM05D002688 ORTHO05D002911 8.2e-18 94.4 125 45.6
Carub.0003s1708 Capsella rubella HOM05D002688 ORTHO05D002911 1.8e-17 93.2 133 40.6
TAR633G0568 Trochodendron aralioides HOM05D002688 ORTHO05D002911 1.8e-17 93.2 133 42.9
vmacro07998 Vaccinium macrocarpon HOM05D002688 ORTHO05D002911 2.4e-17 92.8 124 48.4
Actinidia01055 Actinidia chinensis HOM05D002688 ORTHO05D002911 3.1e-17 92.4 124 46.8
MBI18_g28906_MAGBIO Magnolia biondii HOM05D002688 ORTHO05D002911 3.1e-17 92.4 124 45.2
MSTRG.10181 Avicennia marina HOM05D002688 ORTHO05D002911 5.3e-17 91.7 125 40.0
PSO170G4185 Papaver somniferum HOM05D002688 ORTHO05D002911 5.3e-17 91.7 129 42.6
Thhalv10021424m.g Eutrema salsugineum HOM05D002688 ORTHO05D002911 6.9e-17 91.3 129 42.6
Cc03_g00270 Coffea canephora HOM05D002688 ORTHO05D002911 1.5e-16 90.1 127 44.9
Migut.O00394 Erythranthe guttata HOM05D002688 ORTHO05D002911 4.5e-16 88.6 125 45.6
HPP92_012777 Vanilla planifolia HOM05D002688 ORTHO05D002911 4.5e-16 88.6 138 39.1
EL10Ac3g06268 Beta vulgaris HOM05D002688 ORTHO05D002911 7.6e-16 87.8 125 42.4
Rhsim04G0246900 Rhododendron simsii HOM05D000660 ORTHO05D000766 7.6e-16 87.8 124 44.4
BcaC01g03769 Brassica carinata HOM05D002688 ORTHO05D002911 1.0e-15 87.4 135 40.0
BraA03t13165Z Brassica rapa HOM05D002688 ORTHO05D002911 1.0e-15 87.4 134 41.0
Hma1.2p1_1160F.1_g262460 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 2.9e-15 85.9 126 44.4
SalBow8G2791 Salvia bowleyana HOM05D002688 ORTHO05D002911 8.5e-15 84.3 124 41.9
FAN12G3805 Fragaria x ananassa HOM05D002688 ORTHO05D002911 1.1e-14 84.0 129 39.5
BolC3t17151H Brassica oleracea HOM05D002688 ORTHO05D002911 2.5e-14 82.8 132 43.2
Migut.G00010 Erythranthe guttata HOM05D002688 ORTHO05D002911 2.5e-14 82.8 121 43.8
Sed0020024 Sechium edule HOM05D002688 ORTHO05D002911 5.5e-14 81.6 176 31.2
ATR0796G024 Amborella trichopoda HOM05D002688 ORTHO05D002911 9.3e-14 80.9 128 36.7
Peaxi162Scf00126g01133 Petunia axillaris HOM05D002688 ORTHO05D002911 1.2e-13 80.5 124 39.5
Zm00001eb035790 Zea mays HOM05D002688 ORTHO05D002911 2.7e-13 79.3 124 41.1
DCAR_002540 Daucus carota HOM05D002688 ORTHO05D002911 3.6e-13 79.0 125 43.2
Sabra10G0117800 Salix brachista HOM05D002688 ORTHO05D002911 1.8e-12 76.6 78 50.0
ECA233G1620 Erigeron canadensis HOM05D002688 ORTHO05D002911 1.1e-11 73.9 124 38.7
HanXRQChr13g0402711 Helianthus annuus HOM05D002688 ORTHO05D002911 2.5e-11 72.8 128 38.3
Lsat_1_v5_gn_6_71361 Lactuca sativa HOM05D002688 ORTHO05D002911 2.5e-11 72.8 124 41.9
C03p48720 Brassica napus HOM05D002688 ORTHO05D002911 7.4e-11 71.2 126 39.7
CSS0017271 Camellia sinensis var. sinensis HOM05D002688 ORTHO05D002911 4.8e-10 68.6 108 38.9
CDE02G2980 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 1.4e-09 67.0 124 33.1
Glyma.09G051400 Glycine max HOM05D002688 ORTHO05D002911 1.4e-09 67.0 44 68.2
CDE09G0304 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 6.9e-09 64.7 124 33.1
Aa31LG8G4300 Aethionema arabicum HOM05D002688 ORTHO05D002911 3.4e-08 62.4 44 68.2
Aqoxy1G00319 Aquilegia oxysepala HOM05D002688 ORTHO05D002911 5.9e-08 61.6 124 33.9
Haze_00796 Corylus avellana HOM05D002688 ORTHO05D002911 1.3e-07 60.5 45 60.0
Manes.07G011700 Manihot esculenta HOM05D002688 ORTHO05D002911 2.9e-07 59.3 133 32.3
Atru.chr11.2541 Acer truncatum HOM05D002688 ORTHO05D002911 3.8e-07 58.9 124 30.6
AUR62002567 Chenopodium quinoa HOM05D002688 ORTHO05D002911 5.0e-07 58.5 48 62.5
Os08g0517600 Oryza sativa ssp. japonica HOM05D002688 ORTHO05D002911 6.5e-07 58.2 48 62.5
TWI53G0867 Tripterygium wilfordii HOM05D002688 ORTHO05D002911 6.5e-07 58.2 57 54.4
Cc02_g28990 Coffea canephora HOM05D002688 ORTHO05D002911 8.5e-07 57.8 124 32.3
Solyc01g088000.4 Solanum lycopersicum HOM05D002688 ORTHO05D002911 8.5e-07 57.8 130 31.5
SEGI_29949 Sequoiadendron giganteum HOM05D002688 ORTHO05D002911 1.1e-06 57.4 128 36.7
Sopen01g034900 Solanum pennellii HOM05D002688 ORTHO05D002911 1.1e-06 57.4 132 31.8
AUR62009425 Chenopodium quinoa HOM05D002688 ORTHO05D002911 1.9e-06 56.6 124 29.0
Ciclev10032531m.g Citrus clementina HOM05D002688 ORTHO05D002911 1.9e-06 56.6 124 30.6
HanXRQChr06g0179711 Helianthus annuus HOM05D002688 ORTHO05D002911 2.5e-06 56.2 124 31.5
PGSC0003DMG400006770 Solanum tuberosum HOM05D002688 ORTHO05D002911 3.2e-06 55.8 130 31.5
HPP92_001357 Vanilla planifolia HOM05D002688 ORTHO05D002911 3.2e-06 55.8 125 31.2
Manes.10G135200 Manihot esculenta HOM05D002688 ORTHO05D002911 7.2e-06 54.7 127 32.3


User provided reference genes

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