Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.2e-154 548.9 276 100.0
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.4e-116 423.3 247 87.0
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.1e-105 387.1 239 80.8
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 7.3e-105 384.4 239 79.9
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.8e-103 379.8 239 79.9
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 7.5e-94 347.8 239 70.7
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 8.3e-93 344.4 243 71.2
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 5.1e-90 335.1 249 69.5
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 7.3e-89 331.3 238 69.3
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.6e-88 330.1 239 67.8
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 8.9e-87 324.3 239 69.0
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.5e-86 323.6 242 66.5
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 5.8e-86 321.6 239 67.4
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 5.8e-86 321.6 242 69.0
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 4.9e-85 318.5 234 67.1
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.4e-84 317.0 240 64.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 6.0e-83 311.6 235 67.7
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 6.0e-83 311.6 237 66.7
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 6.6e-82 308.1 234 64.5
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 6.6e-82 308.1 242 64.5
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 8.7e-82 307.8 231 65.8
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 8.7e-82 307.8 233 67.0
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 2.5e-81 306.2 231 65.8
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 5.6e-81 305.1 228 68.9
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 9.6e-81 304.3 241 61.8
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.2e-80 303.9 240 62.1
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.7e-80 302.0 245 61.6
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 4.7e-80 302.0 243 62.6
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 4.7e-80 302.0 240 62.5
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.0e-79 298.9 245 60.8
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 5.2e-79 298.5 235 61.7
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 9.0e-79 297.7 243 60.9
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 1.2e-78 297.4 234 61.1
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.5e-78 297.0 239 66.5
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.5e-78 297.0 246 58.9
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 5.8e-78 295.0 243 60.9
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 9.9e-78 294.3 246 60.6
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 9.9e-78 294.3 246 60.6
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.3e-77 293.9 239 60.7
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 1.7e-77 293.5 239 59.8
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 2.2e-77 293.1 233 63.5
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 4.9e-77 292.0 254 57.9
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 4.3e-73 278.9 239 59.0
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.6e-72 276.9 245 60.8
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.1e-72 276.6 199 67.3
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 2.8e-72 276.2 235 61.3
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 4.8e-72 275.4 246 60.6
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 4.8e-72 275.4 240 56.2
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 4.0e-71 272.3 203 67.5
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 9.0e-71 271.2 230 57.8
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.2e-70 270.8 203 64.5
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 2.6e-70 269.6 218 64.7
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 3.4e-70 269.2 268 54.1
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.2e-69 266.5 202 65.3
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 6.4e-69 265.0 206 64.1
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 6.4e-69 265.0 200 63.0
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.4e-68 263.1 232 58.6
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 3.2e-68 262.7 236 57.2
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 5.4e-68 261.9 241 56.8
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.7e-67 259.6 241 56.0
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.7e-67 259.6 241 56.0
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.3e-66 257.3 241 56.0
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 2.3e-66 256.5 241 55.6
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 5.1e-66 255.4 241 55.6
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 5.1e-66 255.4 241 55.6
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.9e-65 253.4 241 54.8
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 4.3e-65 252.3 240 55.4
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 5.6e-65 251.9 219 54.8
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.6e-64 250.4 258 48.1
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 2.8e-64 249.6 196 60.2
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.7e-64 249.2 240 52.5
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 4.8e-64 248.8 241 53.5
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 1.8e-63 246.9 241 53.1
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.8e-63 246.9 185 65.9
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.4e-63 246.5 202 60.4
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 2.4e-63 246.5 243 52.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 3.1e-63 246.1 244 52.5
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.0e-63 245.7 242 56.6
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 5.3e-63 245.4 262 49.2
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.5e-62 243.8 295 49.2
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 5.8e-62 241.9 241 51.0
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 2.9e-61 239.6 197 59.4
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 6.4e-61 238.4 241 49.8
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.9e-60 236.9 239 50.2
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 3.2e-60 236.1 239 53.6
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.6e-59 233.8 203 63.1
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 2.3e-58 229.9 239 50.6
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.9e-57 226.9 244 47.1
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.8e-55 220.3 247 46.2
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.4e-52 210.7 235 49.8
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.9e-52 210.3 197 56.9
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 4.6e-51 205.7 197 52.3
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 6.0e-51 205.3 266 46.6
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-50 204.5 239 45.2
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 3.9e-50 202.6 237 41.4
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 3.9e-50 202.6 234 47.9
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-49 201.1 229 45.4
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 4.3e-49 199.1 223 52.0
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 4.3e-49 199.1 184 58.7
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 3.7e-48 196.1 239 41.8
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 4.8e-48 195.7 239 46.4
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.1e-47 194.5 167 58.1
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.1e-47 193.0 245 42.9
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.2e-44 181.8 243 38.7
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 3.1e-39 166.4 224 40.2
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 5.9e-38 162.2 224 40.2
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-37 161.4 201 43.3
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-37 160.6 229 40.6
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-36 157.9 224 42.0
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 5.5e-36 155.6 230 38.7
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 7.2e-36 155.2 157 51.6
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.7e-32 144.1 120 57.5
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 4.8e-32 142.5 128 53.1
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 4.1e-31 139.4 106 60.4
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 3.5e-30 136.3 110 58.2
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.9e-30 135.6 147 46.3
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 3.2e-28 129.8 176 43.2
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-27 127.5 211 37.9
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.4e-26 124.4 232 35.8
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.7e-24 117.5 104 54.8
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 2.4e-23 113.6 106 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 1.2e-22 111.3 113 48.7
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.7e-21 107.5 103 50.5
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 8.5e-21 105.1 117 49.6
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 5.5e-20 102.4 113 49.6
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 4.7e-19 99.4 106 45.3
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 4.4e-17 92.8 103 44.7
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 4.4e-17 92.8 151 39.7
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 4.1e-15 86.3 158 36.7
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-14 84.3 74 50.0
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 2.9e-13 80.1 219 26.0
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 3.6e-11 73.2 104 37.5
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.2e-09 68.2 75 46.7
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-09 68.2 144 34.7
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.8e-08 62.8 71 42.3
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 1.4e-07 61.2 91 39.6
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 2.4e-07 60.5 110 35.5
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 5.9e-06 55.8 72 44.4
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 5.9e-06 55.8 72 44.4
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 5.9e-06 55.8 72 44.4


User provided reference genes

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