Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G163200 Theobroma cacao HOM05D007043 ORTHO05D008951 1.1e-104 383.3 188 100.0
Duzib093G0431 Durio zibethinus HOM05D007043 ORTHO05D008951 2.0e-93 345.9 188 90.4
Gohir.A06G112300 Gossypium hirsutum HOM05D007043 ORTHO05D008951 1.1e-88 330.1 188 85.1
Gohir.D06G116500 Gossypium hirsutum HOM05D007043 ORTHO05D008951 4.7e-87 324.7 188 84.0
Gorai.010G134300 Gossypium raimondii HOM05D007043 ORTHO05D008951 4.7e-87 324.7 188 84.0
Ciclev10002599m.g Citrus clementina HOM05D007043 ORTHO05D008951 4.1e-83 311.6 188 78.7
Potri.005G198400 Populus trichocarpa HOM05D007043 ORTHO05D008951 8.5e-81 303.9 188 79.3
Atru.chr13.1985 Acer truncatum HOM05D007043 ORTHO05D008951 1.1e-80 303.5 189 77.2
arahy.Tifrunner.gnm1.ann1.T4LNKK Arachis hypogaea HOM05D007043 ORTHO05D008951 1.5e-80 303.1 188 77.1
Medtr1g097460 Medicago truncatula HOM05D007043 ORTHO05D008951 7.2e-80 300.8 188 73.9
arahy.Tifrunner.gnm1.ann1.7K1R9Z Arachis hypogaea HOM05D007043 ORTHO05D008951 2.3e-78 295.8 188 75.5
Cfa018265 Carpinus fangiana HOM05D007043 ORTHO05D008951 4.0e-78 295.0 194 74.7
CsaV3_6G004900 Cucumis sativus L. HOM05D007043 ORTHO05D008951 2.6e-77 292.4 188 75.0
Haze_17823 Corylus avellana HOM05D007043 ORTHO05D008951 5.7e-77 291.2 187 77.0
Psat6g189600 Pisum sativum HOM05D007043 ORTHO05D008951 7.5e-77 290.8 183 73.2
ClCG08G007230 Citrullus lanatus HOM05D007043 ORTHO05D008951 1.3e-76 290.0 188 73.4
MELO3C019966.2 Cucumis melo HOM05D007043 ORTHO05D008951 1.3e-76 290.0 188 73.4
unitig_52.g17176 Utricularia gibba HOM05D007043 ORTHO05D008951 3.7e-76 288.5 186 72.0
Aqoxy5G02008 Aquilegia oxysepala HOM05D007043 ORTHO05D008951 4.8e-76 288.1 188 72.3
Cpa.g.sc26.119 Carica papaya HOM05D007043 ORTHO05D008951 6.3e-76 287.7 188 73.9
TAR625G0503 Trochodendron aralioides HOM05D007043 ORTHO05D008951 6.3e-76 287.7 188 72.9
Eucgr.F02676 Eucalyptus grandis HOM05D007043 ORTHO05D008951 1.8e-75 286.2 188 71.8
Phvul.007G084700 Phaseolus vulgaris HOM05D007043 ORTHO05D008951 4.1e-75 285.0 188 70.2
CiPaw.15G011600 Carya illinoinensis HOM05D007043 ORTHO05D008951 5.3e-75 284.6 187 74.9
MD05G1035600 Malus domestica HOM05D007043 ORTHO05D008951 5.3e-75 284.6 190 72.6
Prupe.8G043500 Prunus persica HOM05D007043 ORTHO05D008951 5.3e-75 284.6 188 71.8
Glyma.10G220400 Glycine max HOM05D007043 ORTHO05D008951 7.0e-75 284.3 186 71.0
RcHm_v2.0_Chr6g0273931 Rosa chinensis HOM05D007043 ORTHO05D008951 7.0e-75 284.3 186 74.2
FAN15G1248 Fragaria x ananassa HOM05D007043 ORTHO05D008951 2.0e-74 282.7 186 73.1
FAN20G1550 Fragaria x ananassa HOM05D007043 ORTHO05D008951 2.0e-74 282.7 186 73.1
FAN24G2827 Fragaria x ananassa HOM05D007043 ORTHO05D008951 2.7e-74 282.3 186 73.1
Sed0011039 Sechium edule HOM05D007043 ORTHO05D008951 2.7e-74 282.3 186 72.0
TWI60G1299 Tripterygium wilfordii HOM05D007043 ORTHO05D008951 2.7e-74 282.3 184 74.5
GSVIVG01013701001 Vitis vinifera HOM05D007043 ORTHO05D008951 3.5e-74 282.0 186 72.6
Lalb_Chr02g0141621 Lupinus albus HOM05D007043 ORTHO05D008951 4.5e-74 281.6 184 69.6
MD10G1037900 Malus domestica HOM05D007043 ORTHO05D008951 4.5e-74 281.6 190 71.6
Peaxi162Scf00360g00918 Petunia axillaris HOM05D007043 ORTHO05D008951 1.7e-73 279.6 189 72.0
Migut.N02945 Erythranthe guttata HOM05D007043 ORTHO05D008951 2.2e-73 279.3 188 70.2
Hma1.2p1_0678F.1_g202140 Hydrangea macrophylla HOM05D007043 ORTHO05D008951 3.8e-73 278.5 191 70.2
Lj5g0012506 Lotus japonicus HOM05D007043 ORTHO05D008951 3.8e-73 278.5 183 71.0
QL02p036540 Quercus lobata HOM05D007043 ORTHO05D008951 3.8e-73 278.5 195 71.8
QL02p037061 Quercus lobata HOM05D007043 ORTHO05D008951 3.8e-73 278.5 194 72.2
Glyma.20G171100 Glycine max HOM05D007043 ORTHO05D008951 6.5e-73 277.7 186 70.4
ATR1120G076 Amborella trichopoda HOM05D007043 ORTHO05D008951 1.5e-72 276.6 188 68.6
SalBow6G0078 Salvia bowleyana HOM05D007043 ORTHO05D008951 1.9e-72 276.2 188 70.2
Cc10_g06450 Coffea canephora HOM05D007043 ORTHO05D008951 2.5e-72 275.8 194 69.6
PSO170G2334 Papaver somniferum HOM05D007043 ORTHO05D008951 2.5e-72 275.8 192 66.7
VMungo0720G3009 Vigna mungo HOM05D007043 ORTHO05D008951 2.5e-72 275.8 187 68.4
CDE05G0687 Ceratophyllum demersum HOM05D007043 ORTHO05D008951 3.2e-72 275.4 186 68.8
AUR62034911 Chenopodium quinoa HOM05D007043 ORTHO05D008951 4.2e-72 275.0 187 70.1
A07p37900 Brassica napus HOM05D007043 ORTHO05D008951 1.2e-71 273.5 186 71.5
CSS0028309 Camellia sinensis var. sinensis HOM05D007043 ORTHO05D008951 2.1e-71 272.7 191 70.7
Ca_10649_v3 Cicer arietinum L. HOM05D007043 ORTHO05D008951 3.6e-71 271.9 178 73.0
BcaC08g46601 Brassica carinata HOM05D007043 ORTHO05D008951 6.1e-71 271.2 186 71.5
C06p45800 Brassica napus HOM05D007043 ORTHO05D008951 6.1e-71 271.2 186 71.5
CSS0014664 Camellia sinensis var. sinensis HOM05D007043 ORTHO05D008951 6.1e-71 271.2 191 70.2
Hund26674 Selenicereus undatus HOM05D007043 ORTHO05D008951 8.0e-71 270.8 185 69.2
Solyc04g072039.1 Solanum lycopersicum HOM05D007043 ORTHO05D008951 1.4e-70 270.0 198 64.1
PSO210G5925 Papaver somniferum HOM05D007043 ORTHO05D008951 1.8e-70 269.6 192 65.1
Sopen04g028120 Solanum pennellii HOM05D007043 ORTHO05D008951 3.0e-70 268.9 198 64.6
EL10Ac8g19385 Beta vulgaris HOM05D007043 ORTHO05D008951 5.2e-70 268.1 190 68.4
PGSC0003DMG400025055 Solanum tuberosum HOM05D007043 ORTHO05D008951 5.2e-70 268.1 200 65.0
SGA_v2.0_scaffold364G49970 Striga asiatica HOM05D007043 ORTHO05D008951 5.2e-70 268.1 188 69.1
AUR62026618 Chenopodium quinoa HOM05D007043 ORTHO05D008951 6.8e-70 267.7 185 69.7
CAN.G1183.21 Capsicum annuum HOM05D007043 ORTHO05D008951 1.5e-69 266.5 201 65.2
vmacro21135 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 2.0e-69 266.2 192 69.3
vmacro22650 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 2.0e-69 266.2 192 69.3
THA.LOC104800095 Tarenaya hassleriana HOM05D007043 ORTHO05D008951 2.6e-69 265.8 183 68.3
Os05g0182201 Oryza sativa ssp. japonica HOM05D007043 ORTHO05D008951 5.7e-69 264.6 184 68.5
Ah.05g168310 Amaranthus hybridus HOM05D007043 ORTHO05D008951 1.3e-68 263.5 189 68.3
Nitab4.5_0003178g0080 Nicotiana tabacum HOM05D007043 ORTHO05D008951 1.7e-68 263.1 193 68.4
BolC6t39632H Brassica oleracea HOM05D007043 ORTHO05D008951 2.2e-68 262.7 197 67.5
ECA232G2240 Erigeron canadensis HOM05D007043 ORTHO05D008951 2.8e-68 262.3 186 65.1
SHI09106 Sapria himalayana HOM05D007043 ORTHO05D008951 2.8e-68 262.3 186 67.7
TAR625G0569 Trochodendron aralioides HOM05D007043 ORTHO05D008951 1.1e-67 260.4 188 67.6
HanXRQChr11g0320161 Helianthus annuus HOM05D007043 ORTHO05D008951 3.1e-67 258.8 190 67.4
HPP92_024076 Vanilla planifolia HOM05D007043 ORTHO05D008951 3.1e-67 258.8 186 65.1
BraA07t31355Z Brassica rapa HOM05D007043 ORTHO05D008951 5.4e-67 258.1 193 66.3
Thhalv10019190m.g Eutrema salsugineum HOM05D007043 ORTHO05D008951 9.1e-67 257.3 186 68.3
vmacro21134 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 2.0e-66 256.1 216 62.5
Aa31LG4G8890 Aethionema arabicum HOM05D007043 ORTHO05D008951 2.7e-66 255.8 188 66.0
CARHR291040 Cardamine hirsuta HOM05D007043 ORTHO05D008951 2.7e-66 255.8 186 66.7
Carub.0002s1851 Capsella rubella HOM05D007043 ORTHO05D008951 3.5e-66 255.4 186 66.1
AL2G31320 Arabidopsis lyrata HOM05D007043 ORTHO05D008951 7.7e-66 254.2 186 66.7
DCAR_016685 Daucus carota HOM05D007043 ORTHO05D008951 1.7e-65 253.1 177 63.8
vmacro22651 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 2.3e-65 252.7 202 65.3
AT1G71750 Arabidopsis thaliana HOM05D007043 ORTHO05D008951 8.0e-63 244.2 197 62.9
MBI04_g42205_MAGBIO Magnolia biondii HOM05D007043 ORTHO05D008951 1.0e-62 243.8 260 51.2
Nn5g28865 Nelumbo nucifera HOM05D007043 ORTHO05D008951 1.3e-57 226.9 155 69.0
PGR042G2421 Punica granatum HOM05D007043 ORTHO05D008951 2.9e-57 225.7 153 69.3
Manes.18G095900 Manihot esculenta HOM05D007043 ORTHO05D008951 5.0e-57 224.9 155 72.9
Dinv41024 Davidia involucrata HOM05D007043 ORTHO05D008951 2.5e-56 222.6 134 77.6
Lsat_1_v5_gn_9_42421 Lactuca sativa HOM05D007043 ORTHO05D008951 2.1e-55 219.5 188 59.6
Actinidia15616 Actinidia chinensis HOM05D007043 ORTHO05D008951 4.7e-55 218.4 155 68.4
Nitab4.5_0003443g0050 Nicotiana tabacum HOM05D007043 ORTHO05D008951 8.0e-55 217.6 154 68.8
SMO011G0020 Selaginella moellendorffii HOM05D007043 ORTHO05D008951 8.0e-55 217.6 186 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3072 Anthoceros agrestis HOM05D007043 ORTHO05D008951 1.0e-54 217.2 181 57.5
Mapoly0053s0101 Marchantia polymorpha HOM05D007043 ORTHO05D008951 1.8e-54 216.5 182 56.0
Zm00001eb282940 Zea mays HOM05D007043 ORTHO05D008951 5.2e-54 214.9 155 66.5
FvH4_2g12860 Fragaria vesca HOM05D007043 ORTHO05D008951 8.9e-54 214.2 159 67.3
Lj7C386G15 Lonicera japonica HOM05D007043 ORTHO05D004353 1.2e-53 213.8 157 67.5
TPR.G17053 Trifolium pratense HOM05D007043 ORTHO05D008951 1.5e-53 213.4 188 57.4
Sc26g0002900 Simmondsia chinensis HOM05D007043 ORTHO05D008951 1.6e-50 203.4 171 60.8
CANSAT25G3234 Cannabis sativa HOM05D007043 ORTHO05D008951 1.6e-47 193.4 153 61.4
Pp3c20_5410 Physcomitrium patens HOM05D007043 ORTHO05D008951 4.0e-46 188.7 138 64.5
CBR_g38956 Chara braunii HOM05D007043 ORTHO05D008951 2.1e-39 166.4 186 47.8
Cre08.g358900 Chlamydomonas reinhardtii HOM05D007043 ORTHO05D008951 4.7e-39 165.2 189 47.6
Cre17.g708100 Chlamydomonas reinhardtii HOM05D007043 ORTHO05D008951 1.2e-34 150.6 190 44.2
Actinidia17764 Actinidia chinensis HOM05D007043 ORTHO05D008951 1.3e-33 147.1 132 56.1
MCO13G296 Micromonas commoda HOM05D007043 ORTHO05D008951 4.3e-32 142.1 187 43.9
TPR.G793 Trifolium pratense HOM05D007043 ORTHO05D008951 2.1e-31 139.8 72 86.1
PRCOL_00003632 Prasinoderma coloniale HOM05D007043 ORTHO05D008951 3.6e-31 139.0 182 42.9
SGA_v2.0_scaffold364G49968 Striga asiatica HOM05D007043 ORTHO05D008951 6.2e-31 138.3 187 44.4
Sabra05G0151000 Salix brachista HOM05D000032 ORTHO05D004353 7.8e-18 94.7 56 82.1
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 4.0e-06 55.8 53 58.5


User provided reference genes

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