Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G162800 Theobroma cacao HOM05D000533 ORTHO05D001069 4.4e-42 174.1 82 100.0
Lsat_1_v5_gn_2_88021 Lactuca sativa HOM05D000533 ORTHO05D001069 4.3e-29 131.0 69 92.8
RhsimMtG0002300 Rhododendron simsii HOM05D000533 ORTHO05D001069 9.6e-29 129.8 69 91.3
Aqoxy3G01141 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
arahy.Tifrunner.gnm1.ann1.0X9YMY Arachis hypogaea HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
arahy.Tifrunner.gnm1.ann1.ETC72T Arachis hypogaea HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
arahy.Tifrunner.gnm1.ann1.F9JXCN Arachis hypogaea HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
arahy.Tifrunner.gnm1.ann1.MFEB25 Arachis hypogaea HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
arahy.Tifrunner.gnm1.ann1.SG2Q82 Arachis hypogaea HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
Cpa.g.sc263.13 Carica papaya HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
Lalb_Chr00c54g0413531 Lupinus albus HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
Nn1g10104 Nelumbo nucifera HOM05D000533 ORTHO05D001069 2.1e-28 128.6 69 91.3
Gohir.1Z078901 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.8e-28 128.3 69 89.9
HanXRQChr01g0029681 Helianthus annuus HOM05D000533 ORTHO05D001069 2.8e-28 128.3 69 89.9
Lalb_Chr10g0094591 Lupinus albus HOM05D000533 ORTHO05D001069 4.8e-28 127.5 69 89.9
Ah.10g028340 Amaranthus hybridus HOM05D000533 ORTHO05D001069 8.1e-28 126.7 65 93.8
CiPaw.12G057900 Carya illinoinensis HOM05D000533 ORTHO05D001069 8.1e-28 126.7 69 89.9
Dinv06691 Davidia involucrata HOM05D000533 ORTHO05D001069 8.1e-28 126.7 65 93.8
HanXRQChr08g0236031 Helianthus annuus HOM05D000533 ORTHO05D001069 8.1e-28 126.7 65 93.8
HanXRQChr10g0297201 Helianthus annuus HOM05D000533 ORTHO05D001069 8.1e-28 126.7 65 93.8
HanXRQChr14g0434371 Helianthus annuus HOM05D000533 ORTHO05D001069 8.1e-28 126.7 65 93.8
Hma1.2p1_0386F.1_g141700 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 8.1e-28 126.7 65 93.8
CsaV3_6G024010 Cucumis sativus L. HOM05D000533 ORTHO05D001069 1.1e-27 126.3 69 89.9
CsaV3_6G025210 Cucumis sativus L. HOM05D000533 ORTHO05D001069 1.1e-27 126.3 69 89.9
CsaV3_6G025290 Cucumis sativus L. HOM05D000533 ORTHO05D001069 1.1e-27 126.3 69 89.9
SabraMtG0006600 Salix brachista HOM05D000533 ORTHO05D001069 1.4e-27 125.9 68 89.7
arahy.Tifrunner.gnm1.ann1.4DS86I Arachis hypogaea HOM05D000533 ORTHO05D001069 1.8e-27 125.6 67 91.0
arahy.Tifrunner.gnm1.ann1.AFL9HK Arachis hypogaea HOM05D000533 ORTHO05D001069 1.8e-27 125.6 67 91.0
arahy.Tifrunner.gnm1.ann1.I47HSX Arachis hypogaea HOM05D000533 ORTHO05D001069 1.8e-27 125.6 67 91.0
arahy.Tifrunner.gnm1.ann1.LX7XQ5 Arachis hypogaea HOM05D000533 ORTHO05D001069 1.8e-27 125.6 67 91.0
arahy.Tifrunner.gnm1.ann1.P9L1XB Arachis hypogaea HOM05D000533 ORTHO05D001069 1.8e-27 125.6 67 91.0
CsaV3_UNG208520 Cucumis sativus L. HOM05D000533 ORTHO05D001069 1.8e-27 125.6 67 91.0
DCAR_032449 Daucus carota HOM05D000533 ORTHO05D001069 1.8e-27 125.6 65 92.3
Thhalv10028891m.g Eutrema salsugineum HOM05D000533 ORTHO05D001069 2.4e-27 125.2 75 82.7
Aa31csc1081G30 Aethionema arabicum HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
ATMG00510 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
BcaC09g49600 Brassica carinata HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
A04p09590 Brassica napus HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
C01p34660 Brassica napus HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
BolSC28t60325H Brassica oleracea HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
BolSC28t60427H Brassica oleracea HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
BraSC159t45715Z Brassica rapa HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
BraSC48t46291Z Brassica rapa HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
BraSC48t46307Z Brassica rapa HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
Cfa023037 Carpinus fangiana HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
Lsat_1_v5_gn_7_67821 Lactuca sativa HOM05D000533 ORTHO05D001069 4.0e-27 124.4 64 93.8
Lj2A1229G104 Lonicera japonica HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
LjContig00315g0008577 Lotus japonicus HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
Lalb_Chr00c24g0407301 Lupinus albus HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
Sp3g25570 Schrenkiella parvula HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
Sed0003286 Sechium edule HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
Sed0012936 Sechium edule HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
Sopen05g012860 Solanum pennellii HOM05D000533 ORTHO05D001069 4.0e-27 124.4 65 92.3
CAN.G267.14 Capsicum annuum HOM05D000533 ORTHO05D001069 5.3e-27 124.0 65 92.3
Lalb_Chr01g0010941 Lupinus albus HOM05D000533 ORTHO05D001069 5.3e-27 124.0 69 88.4
Peaxi162Scf00864g00009 Petunia axillaris HOM05D000533 ORTHO05D001069 5.3e-27 124.0 65 92.3
Solyc00g500184.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 5.3e-27 124.0 65 92.3
Sopen10g026770 Solanum pennellii HOM05D000533 ORTHO05D001069 5.3e-27 124.0 65 92.3
GSVIVG01006222001 Vitis vinifera HOM05D000533 ORTHO05D001069 5.3e-27 124.0 65 92.3
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 9.0e-27 123.2 67 89.6
SalBow1G6484 Salvia bowleyana HOM05D000533 ORTHO05D001069 9.0e-27 123.2 65 90.8
SGA_v2.0_scaffold400G50831 Striga asiatica HOM05D000533 ORTHO05D001069 9.0e-27 123.2 65 90.8
unitig_87.g27981 Utricularia gibba HOM05D000533 ORTHO05D001069 9.0e-27 123.2 65 90.8
BolC1t03435H Brassica oleracea HOM05D000533 ORTHO05D001069 1.5e-26 122.5 65 90.8
Ca_26704_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 1.5e-26 122.5 107 62.6
Ca_26706_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 1.5e-26 122.5 107 62.6
Solyc09g009360.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.5e-26 122.5 65 90.8
Aqoxy4G01614 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 2.0e-26 122.1 69 87.0
CANSAT16G0052 Cannabis sativa HOM05D000533 ORTHO05D001069 2.0e-26 122.1 65 90.8
FvH4_2g05080 Fragaria vesca HOM05D000533 ORTHO05D001069 2.0e-26 122.1 65 90.8
FvH4_c1g00130 Fragaria vesca HOM05D000533 ORTHO05D001069 2.0e-26 122.1 65 90.8
FAN20G0581 Fragaria x ananassa HOM05D000533 ORTHO05D001069 2.0e-26 122.1 65 90.8
RcHm_v2.0_MTg0498261 Rosa chinensis HOM05D000533 ORTHO05D001069 2.0e-26 122.1 65 90.8
Sopen12g017210 Solanum pennellii HOM05D000533 ORTHO05D001069 2.6e-26 121.7 65 90.8
Nitab4.5_0004030g0010 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.4e-26 121.3 65 90.8
Actinidia34825 Actinidia chinensis HOM05D000533 ORTHO05D001069 4.5e-26 120.9 64 90.6
CDE02G3581 Ceratophyllum demersum HOM05D000533 ORTHO05D001069 9.9e-26 119.8 64 90.6
FAN26G3352 Fragaria x ananassa HOM05D000533 ORTHO05D001069 9.9e-26 119.8 67 86.6
Nitab4.5_0012445g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 9.9e-26 119.8 64 90.6
CAN.G1.13 Capsicum annuum HOM05D000533 ORTHO05D001069 1.7e-25 119.0 67 86.6
Nitab4.5_0007336g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.7e-25 119.0 65 87.7
HanXRQMTg0579581 Helianthus annuus HOM05D000533 ORTHO05D001069 6.4e-25 117.1 60 93.3
PGSC0003DMG400030943 Solanum tuberosum HOM05D000533 ORTHO05D001069 1.9e-24 115.5 65 87.7
Sopen01g027210 Solanum pennellii HOM05D000533 ORTHO05D001069 2.4e-24 115.2 65 86.2
Ca_17160_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 3.2e-24 114.8 60 91.7
HanXRQChr04g0109051 Helianthus annuus HOM05D000533 ORTHO05D001069 4.2e-24 114.4 60 91.7
Nitab4.5_0006806g0120 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.2e-24 114.4 65 86.2
Lalb_Chr01g0010881 Lupinus albus HOM05D000533 ORTHO05D001069 7.9e-23 110.2 59 89.8
SEGI_01046 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.9e-21 105.5 65 81.5
SEGI_25166 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.9e-21 105.5 65 81.5
AUR62043913 Chenopodium quinoa HOM05D000533 ORTHO05D001069 4.3e-21 104.4 53 94.3
ATR1208G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.6e-20 102.4 65 75.4
ATR0203G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 2.1e-20 102.1 65 75.4
AagrBONN_evm.TU.Sc2ySwM_117.4105 Anthoceros agrestis HOM05D000533 ORTHO05D001069 5.3e-19 97.4 65 72.3
Mapoly0011s0058 Marchantia polymorpha HOM05D000533 ORTHO05D001069 6.9e-19 97.1 65 70.8
ATR1155G032 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.4e-18 94.7 64 73.4
Lsat_1_v5_gn_5_16060 Lactuca sativa HOM05D000533 ORTHO05D001069 1.7e-17 92.4 111 49.5
PRCOL_00000735 Prasinoderma coloniale HOM05D000533 ORTHO05D001069 2.9e-17 91.7 65 66.2
Cre09.g405850 Chlamydomonas reinhardtii HOM05D000533 ORTHO05D001069 1.2e-15 86.3 64 59.4
TAR383G0007 Trochodendron aralioides HOM05D000533 ORTHO05D001069 1.2e-15 86.3 47 87.2
Haze_26686 Corylus avellana HOM05D000533 ORTHO05D001069 3.0e-14 81.6 65 55.4
Lsat_1_v5_gn_5_16221 Lactuca sativa HOM05D000533 ORTHO05D001069 9.6e-13 76.6 64 62.5
FAN26G0937 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.6e-12 75.9 58 69.0
Cfa022526 Carpinus fangiana HOM05D000533 ORTHO05D001069 4.8e-12 74.3 65 56.9
MELO3C011772.2 Cucumis melo HOM05D000533 ORTHO05D001069 4.8e-12 74.3 48 75.0
Peaxi162Scf00197g00027 Petunia axillaris HOM05D000533 ORTHO05D001069 3.1e-11 71.6 35 94.3
PGSC0003DMG400029134 Solanum tuberosum HOM05D000533 ORTHO05D001069 2.0e-10 68.9 35 91.4
Oeu057346.1 Olea europaea HOM05D000533 ORTHO05D001069 3.4e-10 68.2 39 82.1
ATR1210G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 5.8e-10 67.4 35 91.4
Lsat_1_v5_gn_4_171240 Lactuca sativa HOM05D000533 ORTHO05D001069 5.8e-10 67.4 45 71.1
CAN.G993.10 Capsicum annuum HOM05D000533 ORTHO05D001069 1.0e-09 66.6 45 77.8
Solyc10g052800.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.3e-09 66.2 51 68.6
CAN.G566.26 Capsicum annuum HOM05D000533 ORTHO05D001069 2.9e-09 65.1 35 85.7
Nitab4.5_0001153g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.0e-09 64.3 35 82.9
Nitab4.5_0000127g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.5e-08 62.0 35 80.0
Ca_26685_v3 Cicer arietinum L. HOM05D000533 ORTHO05D013765 3.2e-08 61.6 38 71.1
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 5.5e-08 60.8 38 71.1
HanXRQChr01g0003461 Helianthus annuus HOM05D000533 ORTHO05D001069 5.5e-08 60.8 31 90.3
CsaV3_6G024180 Cucumis sativus L. HOM05D000533 ORTHO05D019810 1.2e-07 59.7 30 90.0
Nitab4.5_0001919g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.7e-07 58.5 37 81.1
Glyma.14G103300 Glycine max HOM05D000533 ORTHO05D001069 7.9e-07 57.0 34 79.4
Nitab4.5_0008916g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.9e-06 54.7 28 89.3


User provided reference genes

Program Settings