Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G156900 Theobroma cacao HOM05D007679 ORTHO05D009560 1.5e-104 382.9 201 100.0
Duzib041G0061 Durio zibethinus HOM05D007679 ORTHO05D009560 2.6e-75 285.8 197 76.6
Gorai.009G257300 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.4e-59 232.3 194 60.3
Gohir.A13G213100 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.7e-59 231.5 194 60.8
Gohir.A13G213232 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.7e-59 231.5 194 60.8
Gohir.A13G213133 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-58 229.9 194 60.3
Gohir.A13G213166 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-58 229.9 194 60.3
Gohir.A13G213199 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-58 229.9 194 60.3
Gorai.009G256900 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-58 229.9 194 59.3
Gorai.009G257000 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-58 229.9 194 59.3
Gorai.009G257100 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-58 229.9 194 59.3
Gorai.N024500 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-58 229.9 194 59.8
Gorai.009G256800 Gossypium raimondii HOM05D007679 ORTHO05D009560 6.3e-58 228.0 194 59.8
Gorai.009G256100 Gossypium raimondii HOM05D007679 ORTHO05D009560 8.3e-58 227.6 194 59.3
Gorai.009G256400 Gossypium raimondii HOM05D007679 ORTHO05D009560 8.3e-58 227.6 194 58.8
Gorai.009G257400 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.4e-57 226.9 194 58.8
Thecc.08G157300 Theobroma cacao HOM05D007679 ORTHO05D009560 1.8e-57 226.5 192 62.5
Gorai.009G255800 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.4e-57 226.1 194 59.3
Gohir.D05G246900 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.1e-57 225.7 194 58.2
Gohir.A13G213265 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.4e-57 224.9 194 58.8
Gohir.1Z049388 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.7e-56 222.6 194 60.3
Gohir.D05G246800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.7e-56 222.6 194 59.3
Gorai.009G257500 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.7e-56 222.6 194 57.7
Gohir.D05G246400 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.0e-55 220.7 194 57.7
Gorai.009G256700 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.3e-55 219.5 194 57.2
Gohir.A05G244800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.5e-54 216.9 194 58.8
Gohir.D05G245700 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.5e-54 216.9 194 57.2
Gohir.A05G244700 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.9e-54 216.5 194 57.2
Gorai.009G256000 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.9e-54 216.5 194 58.2
Gohir.A05G245201 Gossypium hirsutum HOM05D007679 ORTHO05D009560 4.3e-54 215.3 188 59.0
Gohir.A05G245072 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.6e-54 214.9 194 57.7
Gohir.A05G245150 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.3e-54 214.5 188 59.0
Gohir.A05G245336 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.3e-54 214.5 194 58.2
Gohir.A05G245318 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.2e-53 213.8 194 57.7
Gorai.009G257600 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.6e-53 212.2 194 57.7
Gohir.D05G246050 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.4e-52 210.3 188 58.0
Gohir.A05G245372 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.3e-52 209.5 194 56.2
Duzib041G0498 Durio zibethinus HOM05D007679 ORTHO05D009560 8.9e-52 207.6 193 61.1
Duzib093G1264 Durio zibethinus HOM05D007679 ORTHO05D009560 2.6e-51 206.1 192 57.8
Gorai.009G255700 Gossypium raimondii HOM05D007679 ORTHO05D009560 9.8e-51 204.1 194 54.6
Gohir.D05G245800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.9e-50 202.6 194 54.6
Gohir.A05G245390 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.1e-49 200.7 194 56.7
Gorai.009G256200 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.1e-49 200.7 194 53.6
Gohir.A05G245300 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.4e-49 199.5 186 57.0
Gorai.009G264900 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.4e-49 199.5 193 53.4
Gorai.009G256300 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.7e-48 196.1 194 51.0
Gohir.A05G251500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.8e-48 194.5 197 51.3
Gohir.D05G252300 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.0e-47 194.1 193 52.3
Gohir.1Z049488 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.0e-47 191.8 161 59.0
Gohir.A05G245251 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.0e-47 191.8 161 59.0
Gohir.D05G246075 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.0e-47 191.8 194 54.1
Gohir.A05G245054 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.6e-47 191.4 194 54.1
Gohir.D05G246701 Gossypium hirsutum HOM05D007679 ORTHO05D009560 4.3e-46 188.7 194 52.1
Gorai.009G255900 Gossypium raimondii HOM05D007679 ORTHO05D009560 5.6e-46 188.3 194 52.6
Gorai.009G257200 Gossypium raimondii HOM05D007679 ORTHO05D009560 7.3e-46 188.0 194 52.6
Gohir.D05G246600 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.1e-45 186.4 170 57.6
Gohir.A05G245408 Gossypium hirsutum HOM05D007679 ORTHO05D009560 4.7e-45 185.3 185 54.6
Gohir.D05G246100 Gossypium hirsutum HOM05D007679 ORTHO05D009560 8.9e-44 181.0 166 57.2
Gohir.D05G246025 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.6e-43 179.5 194 49.5
Gohir.A05G244900 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.4e-43 179.1 195 51.8
Gohir.D05G245900 Gossypium hirsutum HOM05D007679 ORTHO05D009560 9.8e-43 177.6 194 50.0
COL.COLO4_34260 Corchorus olitorius HOM05D007679 ORTHO05D009560 2.9e-42 176.0 197 54.3
Gorai.009G255600 Gossypium raimondii HOM05D007679 ORTHO05D009560 8.3e-42 174.5 194 49.0
Gohir.D05G245666 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.0e-41 171.4 194 50.5
Gohir.A05G245036 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.1e-39 165.2 194 49.5
Gorai.009G256500 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.3e-38 162.5 194 45.9
Gorai.009G255500 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.2e-37 160.6 159 50.9
Gohir.A05G244650 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-37 160.2 143 58.7
Gohir.A05G245500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-37 160.2 194 48.5
Gorai.009G257700 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.6e-37 159.1 151 53.6
Gohir.A05G245000 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.1e-36 157.5 132 58.3
Gohir.D05G246000 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.1e-36 156.0 194 46.9
Gohir.D05G247000 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.1e-36 156.0 194 47.4
Gohir.D05G245750 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.8e-35 151.8 140 57.9
Gohir.D05G246500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.5e-35 151.4 132 60.6
COL.COLO4_08899 Corchorus olitorius HOM05D007679 ORTHO05D009560 6.4e-34 148.3 197 48.7
Gohir.A05G245001 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.0e-32 141.7 194 44.8
Gohir.A05G245100 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.0e-32 141.7 194 44.8
Gohir.D05G245633 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.0e-31 141.0 169 47.3
Gohir.A05G245354 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.0e-31 139.4 126 60.3
Gohir.A05G245018 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.6e-30 135.2 177 45.2
Gorai.009G256600 Gossypium raimondii HOM05D007679 ORTHO05D009560 5.6e-30 135.2 194 41.8
COL.COLO4_06833 Corchorus olitorius HOM05D007679 ORTHO05D009560 1.5e-27 127.1 131 48.9
COL.COLO4_08898 Corchorus olitorius HOM05D007679 ORTHO05D009560 1.9e-22 110.2 172 44.8
COL.COLO4_13382 Corchorus olitorius HOM05D007679 ORTHO05D009560 7.3e-22 108.2 103 54.4
COL.COLO4_03793 Corchorus olitorius HOM05D007679 ORTHO05D009560 2.6e-19 99.8 191 35.1
Gohir.D05G246850 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-16 90.5 99 53.5
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 1.6e-16 90.5 139 38.1
COL.COLO4_13804 Corchorus olitorius HOM05D007679 ORTHO05D009560 7.8e-16 88.2 213 31.5
QL02p038558 Quercus lobata HOM05D004894 ORTHO05D005689 1.0e-15 87.8 148 35.1
QL02p037589 Quercus lobata HOM05D004894 ORTHO05D005689 3.9e-15 85.9 176 33.5
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 5.1e-15 85.5 160 35.0
QL02p037592 Quercus lobata HOM05D004894 ORTHO05D005689 1.1e-14 84.3 187 32.1
QL02p038562 Quercus lobata HOM05D004894 ORTHO05D005689 1.1e-14 84.3 187 32.1
COL.COLO4_13383 Corchorus olitorius HOM05D007679 ORTHO05D009560 2.5e-14 83.2 68 58.8
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 2.5e-14 83.2 183 32.2
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 4.3e-14 82.4 187 32.1
MD10G1032400 Malus domestica HOM05D004894 ORTHO05D005689 2.8e-13 79.7 128 35.2
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 4.8e-13 79.0 195 31.3
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 4.8e-13 79.0 148 33.8
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 1.1e-12 77.8 153 34.6
Haze_17791 Corylus avellana HOM05D004894 ORTHO05D009560 1.4e-12 77.4 189 31.7
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 1.4e-12 77.4 186 30.6
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 1.8e-12 77.0 148 33.8
Sabra13G0011900 Salix brachista HOM05D004894 ORTHO05D009560 5.3e-12 75.5 168 29.2
Cpa.g.sc49.91 Carica papaya HOM05D007679 ORTHO05D009560 9.0e-12 74.7 159 28.9
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.2e-11 74.3 148 33.1
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 3.4e-11 72.8 172 29.7
FAN24G0571 Fragaria x ananassa HOM05D004894 ORTHO05D005689 1.3e-10 70.9 130 35.4
Medtr4g062290 Medicago truncatula HOM05D004894 ORTHO05D005689 1.3e-10 70.9 164 31.7
Psat6g191520 Pisum sativum HOM05D004894 ORTHO05D005689 2.2e-10 70.1 180 30.6
Psat6g191960 Pisum sativum HOM05D004894 ORTHO05D005689 2.2e-10 70.1 180 30.6
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 6.4e-10 68.6 130 33.8
Glyma.20G168700 Glycine max HOM05D004894 ORTHO05D005689 8.4e-10 68.2 135 34.8
Medtr1g098410 Medicago truncatula HOM05D004894 ORTHO05D005689 1.4e-09 67.4 142 33.8
Cpa.g.sc49.90 Carica papaya HOM05D007679 ORTHO05D009560 1.9e-09 67.0 168 32.1
Lj2g0017521 Lotus japonicus HOM05D004894 ORTHO05D005689 1.9e-09 67.0 145 35.9
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 5.4e-09 65.5 182 29.7
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 5.4e-09 65.5 143 35.7
Lalb_Chr03g0035461 Lupinus albus HOM05D004894 ORTHO05D005689 1.2e-08 64.3 152 30.9
TPR.G12614 Trifolium pratense HOM05D004894 ORTHO05D005689 2.7e-08 63.2 158 28.5
Ca_10673_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 3.5e-08 62.8 153 32.0
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 1.3e-07 60.8 182 29.1
Glyma.16G164600 Glycine max HOM05D004894 ORTHO05D005689 1.8e-07 60.5 174 30.5
TPR.G9011 Trifolium pratense HOM05D004894 ORTHO05D005689 1.8e-07 60.5 125 32.0
CiPaw.15G014000 Carya illinoinensis HOM05D004894 ORTHO05D005689 2.3e-07 60.1 133 29.3
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 3.0e-07 59.7 182 28.6
Peaxi162Scf00079g00202 Petunia axillaris HOM05D011489 ORTHO05D014472 3.0e-07 59.7 181 30.9
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 3.9e-07 59.3 132 32.6
THA.LOC104800050 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 8.7e-07 58.2 154 29.9
VMungo0464G0707 Vigna mungo HOM05D004894 ORTHO05D005689 1.1e-06 57.8 148 31.8
VMungo0647G0768 Vigna mungo HOM05D004894 ORTHO05D005689 1.1e-06 57.8 172 30.8
FAN20G3174 Fragaria x ananassa HOM05D004894 ORTHO05D005689 1.5e-06 57.4 190 27.4
Phvul.004G091800 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.9e-06 57.0 148 31.8
Psat1g100960 Pisum sativum HOM05D004894 ORTHO05D005689 4.3e-06 55.8 143 31.5
Phvul.007G082100 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 7.4e-06 55.1 152 27.6
Phvul.008G271200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 9.6e-06 54.7 168 28.6


User provided reference genes

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