Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 0.0e+00 4523.0 2415 100.0
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 0.0e+00 2620.5 2463 62.4
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 0.0e+00 1568.9 2506 44.1
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 0.0e+00 1479.5 2494 44.0
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 0.0e+00 1452.6 2540 43.1
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 0.0e+00 1407.5 2798 40.5
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 4.2e-55 222.2 851 30.1
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 7.2e-47 194.9 1389 25.5
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 2.6e-41 176.4 2580 23.3
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 3.4e-41 176.0 755 30.1
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 5.7e-36 158.7 786 27.7
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 1.4e-34 154.1 1352 23.9
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 1.3e-27 131.0 1167 24.8
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 1.7e-27 130.6 436 33.5
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 2.0e-25 123.6 377 33.4
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 2.4e-18 100.1 436 30.7
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 1.2e-17 97.8 595 28.4
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 2.9e-16 93.2 392 27.6
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 3.8e-16 92.8 380 32.1
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 7.2e-15 88.6 410 29.5
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 1.2e-14 87.8 271 31.0
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 2.1e-14 87.0 300 33.0
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 2.1e-14 87.0 593 27.0
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 2.7e-14 86.7 180 34.4
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 2.3e-13 83.6 519 27.7
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 4.0e-13 82.8 399 29.1
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 5.2e-13 82.4 370 29.2
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 5.2e-13 82.4 230 32.2
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 5.2e-13 82.4 356 29.8
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 4.4e-12 79.3 427 25.8
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 2.2e-11 77.0 170 34.7
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 3.7e-11 76.3 550 28.0
Atru.chr3.78 Acer truncatum HOM05D036810 ORTHO05D030759 4.8e-11 75.9 188 36.2
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 4.8e-11 75.9 95 47.4
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 4.8e-11 75.9 442 28.5
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 6.3e-11 75.5 138 37.0
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 8.3e-11 75.1 217 32.3
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.4e-10 74.3 119 37.0
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.8e-10 73.9 534 26.8
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 1.8e-10 73.9 106 46.2
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 3.1e-10 73.2 113 43.4
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 5.4e-10 72.4 117 40.2
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 7.0e-10 72.0 147 35.4
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 1.2e-09 71.2 97 44.3
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 1.2e-09 71.2 515 28.0
Atru.chr13.2072 Acer truncatum HOM05D015223 ORTHO05D030758 1.3e-08 67.8 363 24.2
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 1.7e-08 67.4 528 26.1
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.7e-08 67.4 296 28.4
CiPaw.16G010200 Carya illinoinensis HOM05D013130 ORTHO05D030758 2.2e-08 67.0 157 40.1
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 2.9e-08 66.6 548 24.8
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 3.8e-08 66.2 168 31.5
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 5.0e-08 65.9 148 33.1
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 6.5e-08 65.5 296 28.0
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.5e-07 63.5 324 24.7
Dinv41064 Davidia involucrata HOM05D016043 ORTHO05D015789 3.2e-07 63.2 290 27.9
Lsat_1_v5_gn_1_4921 Lactuca sativa HOM05D011323 ORTHO05D010674 4.2e-07 62.8 184 29.9
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 5.5e-07 62.4 508 24.2
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 5.5e-07 62.4 41 70.7
GSVIVG01034553001 Vitis vinifera HOM05D016043 ORTHO05D015789 5.5e-07 62.4 525 24.6
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 7.2e-07 62.0 330 26.4
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.2e-06 61.2 64 50.0
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 1.2e-06 61.2 41 68.3
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 1.6e-06 60.8 310 27.7
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 2.1e-06 60.5 41 68.3
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 2.7e-06 60.1 42 64.3
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 2.7e-06 60.1 39 69.2
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 2.7e-06 60.1 39 69.2
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 2.7e-06 60.1 96 40.6
Dinv42169 Davidia involucrata HOM05D023276 ORTHO05D026395 3.6e-06 59.7 38 71.1
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 4.7e-06 59.3 53 50.9
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 6.1e-06 58.9 130 34.6
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 6.1e-06 58.9 461 24.7
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 8.0e-06 58.5 91 36.3
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 8.0e-06 58.5 91 36.3
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 8.0e-06 58.5 50 54.0


User provided reference genes

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