Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 0.0e+00 1292.3 659 100.0
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 7.0e-263 910.6 656 73.3
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 1.5e-236 823.2 649 67.6
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 3.2e-231 805.4 649 65.9
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 5.1e-205 718.4 507 72.2
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 1.0e-173 614.4 659 53.4
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 4.2e-167 592.4 704 48.4
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 2.1e-166 590.1 670 50.9
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 4.6e-166 589.0 661 51.4
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 1.4e-165 587.4 662 50.5
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 1.1e-162 577.8 641 52.1
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 4.2e-159 565.8 664 49.2
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 2.1e-158 563.5 651 50.1
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.1e-156 557.8 443 67.9
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 3.3e-156 556.2 676 48.4
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 1.3e-155 554.3 594 53.0
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.1e-154 551.2 649 48.5
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 5.9e-153 545.4 662 49.1
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 4.2e-151 539.3 678 46.6
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 1.2e-150 537.7 678 46.5
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 8.8e-149 531.6 678 45.9
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 8.8e-149 531.6 673 47.1
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 1.3e-147 527.7 687 46.6
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 1.3e-147 527.7 656 47.9
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 1.3e-144 517.7 700 45.4
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 2.1e-142 510.4 695 46.2
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 3.6e-142 509.6 663 46.3
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 1.0e-141 508.1 643 47.4
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 8.8e-141 505.0 716 44.6
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 7.5e-140 501.9 663 46.2
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 1.3e-139 501.1 664 45.8
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 2.4e-138 496.9 670 44.0
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 2.4e-138 496.9 661 46.3
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 1.6e-137 494.2 673 46.8
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 3.5e-137 493.0 546 49.6
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 1.4e-133 481.1 657 43.8
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 1.5e-132 477.6 685 44.2
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 1.1e-130 471.5 516 49.8
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 1.7e-128 464.2 659 44.0
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 1.7e-128 464.2 671 42.9
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 2.5e-127 460.3 703 42.8
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 4.7e-126 456.1 590 46.6
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 8.0e-126 455.3 685 41.5
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 2.6e-124 450.3 657 42.9
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 3.4e-124 449.9 678 42.0
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 3.7e-123 446.4 654 41.3
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 6.3e-123 445.7 677 43.0
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 8.3e-123 445.3 557 44.3
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 1.4e-122 444.5 676 42.3
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 9.2e-122 441.8 684 39.9
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 4.5e-121 439.5 489 48.1
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 1.3e-120 438.0 626 43.6
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 6.8e-117 425.6 555 47.7
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 1.2e-116 424.9 403 55.3
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 3.7e-115 419.9 642 41.4
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 1.9e-114 417.5 701 39.4
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 4.3e-111 406.4 741 35.6
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 7.3e-111 405.6 635 41.3
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 2.1e-110 404.1 652 40.2
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 2.8e-110 403.7 635 40.5
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 2.6e-108 397.1 687 40.2
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 3.4e-108 396.7 682 39.9
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 4.4e-108 396.4 641 39.2
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 1.7e-107 394.4 633 40.1
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 1.2e-105 388.3 473 44.4
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 3.1e-101 373.6 641 40.1
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 1.3e-99 368.2 637 40.5
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 1.3e-96 358.2 663 42.2
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 3.6e-94 350.1 661 37.1
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 5.8e-92 342.8 655 38.8
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 7.1e-90 335.9 322 57.1
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 2.1e-89 334.3 390 46.7
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 3.9e-88 330.1 673 35.8
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 5.1e-88 329.7 502 44.4
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 6.6e-88 329.3 741 34.3
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 1.5e-87 328.2 552 40.9
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 2.8e-86 323.9 675 36.1
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 6.2e-86 322.8 548 41.1
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 6.4e-83 312.8 549 39.9
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 1.1e-82 312.0 551 40.5
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 1.6e-78 298.1 676 35.1
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 2.9e-75 287.3 668 33.1
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 2.4e-74 284.3 370 42.2
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 2.1e-73 281.2 428 42.8
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 2.1e-73 281.2 318 47.5
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 7.9e-73 279.3 352 44.3
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 3.0e-72 277.3 254 54.7
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 5.1e-72 276.6 672 31.1
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 2.1e-70 271.2 303 45.5
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 2.4e-61 241.1 314 42.0
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 1.0e-59 235.7 263 44.9
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 1.3e-59 235.3 206 60.7
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 2.1e-57 228.0 308 41.9
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 2.1e-57 228.0 328 43.9
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 4.6e-57 226.9 361 43.2
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 1.3e-56 225.3 318 44.7
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 2.1e-49 201.4 239 49.8
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 4.6e-49 200.3 361 35.5
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.1e-47 195.7 159 62.3
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 2.4e-45 188.0 232 50.9
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.7e-43 181.8 224 44.2
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 1.9e-42 178.3 343 37.3
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 5.5e-42 176.8 361 35.5
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 5.7e-39 166.8 242 43.8
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 9.4e-34 149.4 291 35.1
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 2.7e-33 147.9 375 33.9
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 2.3e-32 144.8 441 27.4
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 4.0e-24 117.5 164 49.4
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 6.3e-22 110.2 128 53.9
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 2.7e-20 104.8 249 35.3
QL02p038810 Quercus lobata HOM05D006715 ORTHO05D008345 2.5e-10 71.6 164 34.1
arahy.Tifrunner.gnm1.ann1.12T13Y Arachis hypogaea HOM05D006715 ORTHO05D008345 1.0e-08 66.2 92 39.1
CSS0020713 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.8e-08 65.5 126 38.9
TAR381G0879 Trochodendron aralioides HOM05D006715 ORTHO05D008345 5.7e-07 60.5 171 24.6
SEGI_02927 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 7.5e-07 60.1 246 26.8
Cre12.g523650 Chlamydomonas reinhardtii HOM05D003388 ORTHO05D005602 6.4e-06 57.0 54 48.1
MCO04G092 Micromonas commoda HOM05D004492 ORTHO05D005602 8.3e-06 56.6 394 23.6


User provided reference genes

Program Settings